Hi. That indicates a problem with dynamic load balancing. Try to build different sizes of the box.
On Sat, Apr 28, 2018 at 11:57 AM, Sahithya S Iyer <sah2...@gmail.com> wrote: > Hi, > > I am trying to calculate interaction between specific residues using gmx > mdrun -rerun flag. The trajectory was in a dcd format, which I converted to > a trr file. I get the following error - > > Domain decomposition has not been implemented for box vectors that have > non-zero components in directions that do not use domain decomposition: > ncells > = 1 8 1, box vector[2] = 0.000000 10.536000 0.000000 > > Can someone please tell me what could be going wrong here ? > -- > Gromacs Users mailing list > > * Please search the archive at http://www.gromacs.org/ > Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- *Regards,* *Rahul Suresh* *Research Scholar* *Bharathiar University* *Coimbatore* -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
