Hi,

There is an axis of each cylinder but the two won't be parallel so there is
no unique distance to measure. So I suggest thinking carefully about what
you really want.

Mark

On Sat, Aug 11, 2018, 06:58 Shan Jayasinghe <shanjayasinghe2...@gmail.com>
wrote:

> Hi,
>
> I tried to used gmx distance. However, I don't understand how can I define
> the center of the circle face of the cylinder to the same in the other
> cylindrical micelle.
>
> Can anyone help me?
> Thank you.
>
>
> On Sat, Aug 11, 2018 at 9:33 AM Mark Abraham <mark.j.abra...@gmail.com>
> wrote:
>
> > Hi,
> >
> > Have you looked at the different tools available and considered what
> might
> > be useful for you?
> >
> > Mark
> >
> > On Fri, Aug 10, 2018, 07:34 Shan Jayasinghe <
> shanjayasinghe2...@gmail.com>
> > wrote:
> >
> > > Dear Gromacs Users,
> > >
> > > I want to calculate the center to center distance of two cylindrical
> > > micelles in my simulation. What gmx command should I use to calculate
> the
> > > distance? Can anyone help me?
> > >
> > > Thank you.
> > > --
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> --
> Best Regards
> Shan Jayasinghe
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