Hi all This pulling protocol of gromacs is still in doubt
Please tell me if there is dsDNA of chain A (12 bp) and complimentary strand B(12 bp) like chain A- 3' - 5' chain B- 5' - 3' If I pull 5' end of strand A and made 5' of B as a reference group along the helical direction under constant velocity pulling. And both the chains are free ( no restraint) , under this situation will the 5' of chain B (act as reference group) feel the equal and opposite force like 5' end of chain A where pulling is applied . Due to this equal and opposite force both the strand will move opposite to each other or not . -- *With Best-Rakesh Kumar Mishra* * (RA)CSD SINP Kolkata, India* *E-mail - rakesh.mis...@saha.ac.in <rakesh.mis...@saha.ac.in> * *Phone n. +91 9473662491, +918777496532* -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
