Hi all, I am working on the Hydration dynamics studies on Aquaporin 0 which is membrane protein, Downloaded from the MemProt database and performed production MD for a time scale of 100ns. I am facing difficulty in identifying and eliminating the time period for which the system has undergone equillibration. What is the constrain should I use, are there any references? As for now iam referring the KALP -5 in DPPC .
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