Dear all, sorry for my unclear question, I attached here the quick draw picture of what I am saying, please take a look: https://www.dropbox.com/s/eycsm3qsywhgxjv/model.pdf?dl=0 Thank you and best regards, Quyen
On Sat, Oct 20, 2018 at 6:27 AM Quyen Vu Van <vuqv.p...@gmail.com> wrote: > Dear Mark, > I mean that e.g my protein has 10 residues in pdb file but at t=0, Gromacs > will only calculate the interactions of all atoms in residue 1 > t= 1ns (for example) Gromacs will calculate the interactions of all atoms > in residues 1 and 2, and so on till t= XXX ns, interactions of all atoms of > full protein is take into account. > Best regards, > Quyen > > > On Fri, Oct 19, 2018, 18:42 Mark Abraham <mark.j.abra...@gmail.com> wrote: > >> Hi, >> >> What do you mean by turning a residue off? What would terminate the >> chemical bond to the residue that it was bound to? >> >> Mark >> >> On Fri, Oct 19, 2018, 14:40 Quyen Vu Van <vuqv.p...@gmail.com> wrote: >> >> > Dear Gromacs community, >> > How can I turn off/on residues in the protein, I want to mimic the >> process >> > of protein synthesis. >> > Thank you and best regards, >> > Quyen >> > -- >> > Gromacs Users mailing list >> > >> > * Please search the archive at >> > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before >> > posting! >> > >> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > >> > * For (un)subscribe requests visit >> > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or >> > send a mail to gmx-users-requ...@gromacs.org. >> > >> -- >> Gromacs Users mailing list >> >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before >> posting! >> >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> * For (un)subscribe requests visit >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or >> send a mail to gmx-users-requ...@gromacs.org. >> > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.