Dear Users, Suppose you do not use pdb2gmx and therefore do not use the -I option for all constraints. Suppose further you do not generate a restraint file for the non-protein molecules in the model.
Then what effect, if any, does setting constraints = all-bonds or h-bonds have ? Thanks Paul -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
