Dear Dr. Kutzner, Thank you for your reply.
I have already solved the problem. I made the channels indexing by hand and make a mistake. As a result, split groups were set too close to each other and I got two extremely unequal compartments. I used indexes for channels created with makeSandwich.sh and it solved the problem. Sincerely, Harutyun -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
