On Tue 9 Apr, 2019, 8:49 PM banijamali_fs, <banijamali...@ut.ac.ir> wrote:
> Hi there, > > when I type the command > > gmx grompp -f nvt.mdp -c min.gro -p topol.top -o nvt.tpr > > and in continuation, this command: > > gmx mdrun -v -deffnm nvt > > I get this error: > > There is no domain decomposition for 24 ranks that is compatible with > the > given box and a minimum cell size of 3.33469 nm > Change the number of ranks or mdrun option -rdd or -dds > Look in the log file for details on the domain decomposition > > There is something wrong with the topology of the system. Please check the > bonnded interaction distance and cuttoffs. It appear like system is blowing > up. Have a clean look at the system topology. If possible comment Ur log > file. > Could anyone precisely explain me what should I do? and explain me about > the numbers and the abbreviations that have mentioned in this error, I > don't understand anymore from this error. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.