ok thanks i'll try this Regards
On Mon, Apr 29, 2019 at 5:23 AM Justin Lemkul <jalem...@vt.edu> wrote: > > > On 4/25/19 8:49 AM, neelam wafa wrote: > > Hi! > > I have run 5ns simulation of protein ligand complex and got its rmsd plot > > using gmx_rms. How can i get average rmsd value for this simulation. Is > it > > to be taken from xmgrace graph or there is any way to calculate it? U > cant > > find it in log file. > > You can get the average of any data series (as well as other statistical > analysis) with gmx analyze. > > -Justin > > -- > ================================================== > > Justin A. Lemkul, Ph.D. > Assistant Professor > Office: 301 Fralin Hall > Lab: 303 Engel Hall > > Virginia Tech Department of Biochemistry > 340 West Campus Dr. > Blacksburg, VA 24061 > > jalem...@vt.edu | (540) 231-3129 > http://www.thelemkullab.com > > ================================================== > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.