Make index of water mediated hydrogens and DNA bases so that DNA bases are in separate group and water mediated hydrogens in separate group in drop down menu
On Thu, May 9, 2019, 11:54 AM <sp...@iacs.res.in> wrote: > Dear all > I want to determine the water mediated hydrogen between DNA bases and > small molecule. What extra flag should I use in gmx hbond command? Is > there any other option to capture the water mediated Hbonds? Please > suggest something. > Sunipa Sarkar > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
