Hello,
from looking at the output from make check it looks like this is
harmless. The tests simply took longer than the internally set cut-off
of 30 seconds.
If you are unsure about the build, you can run the test binary manually
from the build directory with (./gmxpreprocess-test in the same
directory where you can find the gmx binary).
Then it won't use the cut-off and will take as much time as it will need.
Cheers
Paul
On 20/05/2019 16:26, Nelson Chris AWE wrote:
Hi All,
I've built gromacs on an Intel x86_64 server with GCC 7.2.0 and OpenMPI
When I run make check, I get a failure on test 29:
29 - GmxPreprocessTests (Timeout)
Any advice would be much appreciated.
Links to output files:
1. Build environment
(https://drive.google.com/open?id=1tBs6scDqR_gJLtBRzpxMSEdbWwxYR5ks )
2. Build output
(https://drive.google.com/open?id=1PQFllv49M-Op6HLtdKsRJfwHbFeEsint )
3. Dependency list
(https://drive.google.com/open?id=13rETIX_ejMs1DPBGcTdsQfWKeYFNwd7T )
4. Make checkout output
(https://drive.google.com/open?id=1YpAEbPSj0eEe2JERbL6OIc49Gd5e57a1 )
5. mdrun - version output
(https://drive.google.com/open?id=1qu44Mk_aLz3d65YldDKo5mMtvJVyvb6D )
Kind regards,
Chris.
Christopher J. Nelson
High Performance Computing
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