Good Evening Friends, I had some problem with my MD analysis. I want to monitor the Ramachandran plot of some residues.
My problem let say I had a tri peptide from which we can get 4 dihedral angles and we can only plot the ramachandran plot for the Mid residue that is second residue. Here What I want is some script or Method to monitor the changes occur in the Ramachandran plot during the simulation period. Let say I have 1000 saved frames each frame has it own Ramachandran plot I want like 40 sec or less duration movie or of the Ramachandran plot from frame 1 to 1000. Them I can monitor the the path in which the peptide secondary structures changes from the frame 1 to 1000. Thank You. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.