Hi.. The command is given below gmx make_ndx -f *.gro -o *.ndx You need to see inside the gro file what are the residue index corresponding to the particular residue Next...When atom selection will appear you select the residues like r66|r65|...So on upto the last residue...And you can name the group as you wish
On Thu 15 Aug, 2019, 9:52 PM Dhaniram Mahato, <bioinfo...@gmail.com> wrote: > Index file is always in a serial no. You can check the residue serial no. > by opening the pdb in text format. > > "gmx make_ndx " is the command to use to see all indices and then choose > your residues accordingly. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
