Hello, All you need to run a Martini simulation is a gro file (most straightforward is to create an atomistic system and use martinize.py or generate lipids by insane.py) and a top file (fairly easy). After that you include the appropriate particle definition itp files in the working directory and you should be good to run grompp.
Best wishes, Sahil On 2019-12-03 14:25, Shlomit Afgin wrote: > Hi, > In the tutorial I found only user instructions. > I have GROMACS installed in central place for use of group, I did not find > the installation instruction of Martini into GROMACS installation. > Can someone direct me to the installation instruction? > Thanks > Shlomit > > On 27/11/2019, 15:56, "Justin Lemkul" > <gromacs.org_gmx-users-boun...@maillist.sys.kth.se on behalf of > jalem...@vt.edu> wrote: > > On 11/27/19 7:15 AM, Shlomit Afgin wrote: >> Hi, >> I installed gromacs 2019.4, I understood it contain MARTINI. >> How can I find MARTINI in gromacs, I just installed? > > Download the MARTINI force field from > http://cgmartini.nl/index.php/downloads and follow the tutorials there. > Preparing the system is somewhat different than for atomistic systems. > GROMACS supports MARTINI but it is not a built-in force field for that > reason. > > -Justin > > -- > ================================================== > > Justin A. Lemkul, Ph.D. > Assistant Professor > Office: 301 Fralin Hall > Lab: 303 Engel Hall > > Virginia Tech Department of Biochemistry > 340 West Campus Dr. > Blacksburg, VA 24061 > > jalem...@vt.edu | (540) 231-3129 > http://www.thelemkullab.com > > ================================================== > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a > mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
