The correct address is http://jenkins.gromacs.org/job/Documentation_Nightly_master/javadoc/doxygen/html-full/index.xhtml
Need to fix a link somewhere then I think. /Paul On Wed, 12 Feb 2020, 20:46 Michele Pellegrino, <mic...@kth.se> wrote: > Moreover: the link to Jenkins does not work (section 7.8.1, "Building the > documentation"): > > > http://jenkins.gromacs.org/job/Documentation_Nightly_master/javadoc/html-lib/index.xhtml > > Cheers, > Michele > ________________________________________ > From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se < > gromacs.org_gmx-users-boun...@maillist.sys.kth.se> on behalf of Michele > Pellegrino <mic...@kth.se> > Sent: 12 February 2020 20:39 > To: gmx-us...@gromacs.org > Subject: Re: [gmx-users] generating Doxygen documentation > > Mark, > > no such directory is produced after make (evein if the output is 'Built > target doxygen-all'). > The only Doxyfile I can utilize to generate html/latex documentation is > 'Doxyfile-compact', while all others are still 'Doxyfile-*.cmakein'. > > It seems I need to run cmake somewhere, somehow, but it's not really clear > to me in which directory (and with which options(s)). > > Cheers, > Michele > ________________________________________ > From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se < > gromacs.org_gmx-users-boun...@maillist.sys.kth.se> on behalf of Mark > Abraham <mark.j.abra...@gmail.com> > Sent: 12 February 2020 17:34 > To: Discussion list for GROMACS users > Subject: Re: [gmx-users] generating Doxygen documentation > > Hi, > > When they succeed, the doxygen targets produce files like > > $builddir/docs/html/doxygen/html-*/index.xhtml > > which you can open in your browser. The doxygen for the released versions > is on the web however, so it's much easier to just use or refer to that. > > Mark > > On Wed, 12 Feb 2020 at 16:30, Michele Pellegrino <mic...@kth.se> wrote: > > > Hi, > > > > > > I am trying to generate the Doxygen documentation for GROMACS from the > > files in /docs/doxygen. > > > > I following 2020 manual, I run 'make doxygen-all' in the build directory, > > succesfully; I don't know what to do next: I tried to run cmake in the > > doxygen directory to generate the Doxyfiles, but I get the following > errors: > > > > """ > > > > CMake Error at CMakeLists.txt:36 (include): > > include could not find load file: > > > > gmxCustomCommandUtilities > > > > > > CMake Error at CMakeLists.txt:37 (include): > > include could not find load file: > > > > gmxOptionUtilities > > > > > > CMake Error at CMakeLists.txt:53 (gmx_dependent_option): > > Unknown CMake command "gmx_dependent_option". > > > > """ > > > > What should I do? > > > > > > Thanks for your attention, > > > > Michele > > > > > > p.s. I am referring to the github master branch current version > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > > send a mail to gmx-users-requ...@gromacs.org. > > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.