Write a script that calls gmx insert-molecules 3000 times and uses the previous output as input for each call.
http://manual.gromacs.org/documentation/current/onlinehelp/gmx-insert-molecules.html Is there something you have to do in between each insertion? - John > Hello everybody, > > I am trying to insert molecules into a box but I have to insert one single > molecule at a time reaching 3000 molecule in total. Is there a way to > automate this process ? > > Thanks > Mohamed > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send > a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
