Messages by Thread
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[gmx-users] Calculate dihedrals
Marko Petrovic
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[gmx-users] compile with intel compiler
Harry Mark Greenblatt
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[gmx-users] Extracting temperature of specific groups during the simulations
Mijiddorj B
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[gmx-users] No default bond types
Neena Susan Eappen
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[gmx-users] topology of co2
Afsane Farhadi
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[gmx-users] Drude polarization, practical matters
Nicolás Marcelo Rozas Castro
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[gmx-users] Conversion of improper angles from amber object file to gromacs
Daniel Bauer
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[gmx-users] GROMACS has switched to use Gitlab
Paul bauer
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[gmx-users] Various questions related to Gromacs performance tuning
Tobias Klöffel
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[gmx-users] Lincs warning in free energy calculation
Sadaf Rani
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[gmx-users] Free energy change calculation
Xiaotong Zhang
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Re: [gmx-users] Error in free energy calculation (Chris Neale)
Sadaf Rani
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[gmx-users] Replica exchange: Coordinates and simulation box size?
Johannes Hermann
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[gmx-users] Gmx bundle regarding
RAHUL SURESH
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[gmx-users] comm-grps
Alex
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[gmx-users] Parrinello-Rahman and Pairtype1 causing pressure instabilities
Wesley Michaels
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[gmx-users] distance restraints between different chains
Oscar Hernandez Alba
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[gmx-users] Problem in protein ligand interaction
Gonzalez Fernandez, Cristina
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[gmx-users] Non-linear slowdown in grompp with very many bonded interactions
Chris Neale
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[gmx-users] pdb2gmx command not found
Sutanu L'Étranger
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[gmx-users] ERROR 1 [file lig.itp, line 575]:: ; Duplicate atom index (19) in virtual_sites3
Adarsh V. K.
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[gmx-users] 2020.1: comm broken with -update gpu -bonded gpu ?
Jochen Hub
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[gmx-users] About peptide mutation with non-standard residue
Vicente Domínguez
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[gmx-users] gmx do_dssp not work for gromacs 2020 or 2020.1
liuyujie714
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[gmx-users] Error in free energy calculation
Sadaf Rani
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[gmx-users] alchemical free energy calculation with physical PBC
Johannes Hermann
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[gmx-users] How to find and open Gromacs after installation
Sutanu L'Étranger
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Re: [gmx-users] NDG/BGLC Not Recognised In Force Fields
McDonnell, Thomas
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[gmx-users] lipid tail order parameter
Ipsita Basu
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[gmx-users] k-space settings in GROMACS
Anh Vo
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[gmx-users] Energy values for 1 step NVT/NVE simulation of 100 water molecules
Anh Vo
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[gmx-users] Viscosity of non-newtonian fluid
Jun Zhou
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Re: [gmx-users] gromacs.org_gmx-users Digest, Vol 191, Issue 42
McDonnell, Thomas
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Re: [gmx-users] GROMACS Quick and Dirty Installation Error
Schulz, Roland
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[gmx-users] Failed HardwareTopologyTest on Install (GROMACS 2019.4)
Adam Antoszewski
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[gmx-users] About membrane leaflets and msd
Poncho Arvayo Zatarain
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[gmx-users] Extraction of frames at different interval
Farida Aziz
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[gmx-users] pdb2gmx - generating topology for helicase-DNA complex (3PJR)
Max Winokan
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[gmx-users] Gromax NDG/BGLC Force field Error
McDonnell, Thomas
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[gmx-users] Problems with Non-equilibrium MD
Jun Zhou
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[gmx-users] Quick and Dirty Installation Error
Vinu Harihar
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[gmx-users] Electric field
Mijiddorj B
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[gmx-users] makes sense for Ryckaert Bellemans dihs. only.
Sadaf Rani
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[gmx-users] energy minimization in vacuum
Deepanshi .
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[gmx-users] gmx msd unusual unit
Joe Paul-Taylor
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[gmx-users] Fwd: Problems with Non-equilibrium MD
Jun Zhou
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Re: [gmx-users] no subject
Prasanth G, Research Scholar
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[gmx-users] Reproducibility of a PMF plot
Alex
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[gmx-users] positive potential energy
Afsane Farhadi
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[gmx-users] Fatal error: Too many warnings (3) ; WARNING * [file lig.prm, line **] :: How to overcome this error -> simply delete the lines which give warnings?
Adarsh V. K.
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[gmx-users] "No atom pairs for dispersion correction" Warning from GROMACS 2020 mdrun
Eric Legresley
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[gmx-users] potential energy doesn't have negative value
Afsane Farhadi
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[gmx-users] Request for Plumed sample scripts
Peter Mawanga
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[gmx-users] Creating a simple water box
dodia
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[gmx-users] Linking MYR residue to N-terminus using pdb2gmx
Billy Williams-Noonan
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[gmx-users] Can you help regarding this
Kushal Roy
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[gmx-users] Gromacs Install problem
xuan Zhang
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[gmx-users] Regarding sg parameter
Omkar Singh
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[gmx-users] Regarding parameters for Bromine ion in Charmm36 FF
Dilip.H.N
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[gmx-users] checkpoint files with replica exchange/ -multidir
Daniel Burns
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[gmx-users] pressure fluctuation and actual density
Afsane Farhadi
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[gmx-users] slurm and gromacs
Atila Petrosian
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[gmx-users] Vacuum simulations with Gromacs 2018
Aishwary Shivgan
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[gmx-users] Nose-Hoover vs Berendsen vs V-rescale
Hadi Rahmaninejad
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[gmx-users] Chlorine atom displacement
Samantha Rudinsky
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[gmx-users] gmx traj
Alex
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[gmx-users] query regarding running simulation using GPU
Snehasis Chatterjee
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[gmx-users] GROMACS automation
Mohamed Abdelaal
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[gmx-users] Not all bonded interactions have been properly assigned to the domain decomposition cells
Cardenas, Alfredo E
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Re: [gmx-users] [gmx-developers] The setup of gpu_id has a bug?
Szilárd Páll
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[gmx-users] Replicate a structure
Devargya Chakraborty
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[gmx-users] Setting a electric field in a simulation
Mijiddorj B
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[gmx-users] Troubleshooting Generic Floating Point Exception Errors
Travis Meyer
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[gmx-users] Clarification on the "-surface" and "-output" options of "gmx sasa"
ZHANG Cheng
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[gmx-users] Negative Pressure during equilibration
Sadaf Rani
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[gmx-users] Gromacs 2020
Turega, Simon
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[gmx-users] ERROR 1 [file lig.prm, line 49] - Can I use the the mdp files -> em.mdp followed by em_real.mdp used for Gromacs 5.1.4?
Adarsh V. K.
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Re: [gmx-users] gromacs.org_gmx-users Digest, Vol 191, Issue 10
Eduardo Mayo