Now thats strange... Your process runs, the reporting file is okay, and the output from the seg process is fine, too. Second is a timestamp, third is the SGE job-id, the last ones are the job state changes for SGE as far as I recall - I think it's described in the SGE documentation if you're really interrested... ;-)
What happens with the seg output if you submit a Job to SGE, either via qsub or via globus? Does it print new lines to stdout? If it does, then I'm kinda stumped... Maybe you could check the "usual GRID maladies" - correct Java, correct environment (SGE env for globus, MPI if installed...) -----Ursprüngliche Nachricht----- Von: Patrick Heckeler [mailto:[EMAIL PROTECTED] Gesendet: Montag, 20. August 2007 18:49 An: Assfalg,Christian (APER) BIP-DE-B Betreff: Re: [gt-user] Sun Grid Engine GT4 Integration Thanks for the fast answer... but I still have the same problem... 2007/8/20, [EMAIL PROTECTED] <[EMAIL PROTECTED]>: > Hello, > > Your're right, there's almost certainly a problem with the > scheduler-event-generator. > I've had some issues with this adaptor too. I'll just copy and paste some > documentation i wrote on that, I'm a little short on time right now so this > is not really pretty, I'm sorry. Tell me if this helped. > > Sun Grid Engine Adaptor > If the job appears to execute cleanly in the SGE, but seems to hang at: > "Current job state: Unsubmitted" for the globus toolkit after a while, even > though SGEs qmon or similar lists the job as finished, the Globus Scheduler > Event Generator (SEG), which is part of the adaptor package, is not working > properly. > ps -ef |grep globus-scheduler-event-generator > globus 27828 27773 0 15:08 pts/2 00:00:00 > /opt/globus/libexec/globus-scheduler-event-generator -s fork -t 1171021209 > globus 27842 27773 0 15:08 pts/2 00:00:00 > /opt/globus/libexec/globus-scheduler-event-generator -s sge -t 1170943291 My grep command returns: globus 7618 7571 0 18:20 ? 00:00:00 /grid/globus-4.0.5/libexec/globus-scheduler-event-generator -s fork -t 1187607232 globus 7680 7571 0 18:23 ? 00:00:00 /grid/globus-4.0.5/libexec/globus-scheduler-event-generator -s sge -t 1187621261 so the process seems to run correctly... > If there is no event generator for "sge", try symlinking > $GLOBUS_LOCATION/lib/*_sge_gcc64dbg.* to $GLOBUS_LOCATION/lib/*_sge_gcc64.* > or similar and restart the globus container. There seems to be a bug where > the debug libraries are not recognized properly. > ln -s libglobus_seg_sge_gcc64dbg.a libglobus_seg_sge_gcc64.a > ln -s libglobus_seg_sge_gcc64dbg.la libglobus_seg_sge_gcc64.la > ln -s libglobus_seg_sge_gcc64dbg.so libglobus_seg_sge_gcc64.so > ln -s libglobus_seg_sge_gcc64dbg.so.0 libglobus_seg_sge_gcc64.so.0 > ln -s libglobus_seg_sge_gcc64dbg.so.0.0.0 libglobus_seg_sge_gcc64.so.0.0.0 > If the process is running, check it's settings: > cat /opt/globus/etc/globus-sge.conf > log_path=/opt/N1GE6/T-BIGridBC/common/reporting my cat command: log_path=/grid/n1ge6/default/common/reporting to ensure access to that file i changed permissions: chmod 777 /grid/n1ge6/default/common/reporting > Also, this logfile should contain a lot of entries with job state changes. if > it only contains a few lines, the sgedbwriter service may clear the logfile > and thus prevents the Scheduler Event Generator from monitoring the jobs. The > dbwriter service has been disabled to avoid this issue. I have not installed the dbwriter-service... my reporting file contains a lot of entries > > You can also try to start the event generator manually via > globus-scheduler-event-generator -s sge > And see what it does. I stopped the service and resarted it as user 'globus': globus-scheduler-event-generator -s sge output: 001;1187621261;13;4;100 Fault: (null) Fault: globus_xio: Operation was canceled Strange!! What does your service output? > > There's also a commercial adaptor from gridwisetech > (http://www.gridwisetech.com/) that also provides a WebMDS Information > provider if you need that one (for gridwise for example). It's also available > under an academic licence. Maybe I try the commercial adapter... > > Regards, > Christian Assfalg > > > -----Ursprüngliche Nachricht----- > Von: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Im Auftrag > von Patrick Heckeler > Gesendet: Montag, 20. August 2007 18:05 > An: [email protected] > Betreff: [gt-user] Sun Grid Engine GT4 Integration > > > Hello everybody, > > I have succesfully installed the GT-4.0.5 from source and the Sun Grid > Engine 6.1u2 on a ubuntu feisty server (kernel 2.6.20-15-server). Both > work fine. > Then I installed the SGE-Integration packages > (http://www.lesc.ic.ac.uk/projects/SGE-GT4.html). > A native submit (/grid/globus-4.0.5/bin/globusrun-ws -submit -c > /bin/echo "hello world") is executed with no errors. > But when I submit a job to the Grid Engine > (/grid/globus-4.0.5/bin/globusrun-ws -submit -factory myserver -Ft SGE > -streaming -so /home/username/result -c /bin/echo "hello world" ), I > get following output: > Delegating user credentials...Done. > Submitting job...Done. > Job ID: uuid:f1ee5294-4f33-11dc-9231-000c29eca51d > Termination time: 08/21/2007 15:42 GMT > ... an nothing more happens!!! > > Maybe there is a problem with the reporting file of the SGE... > I configured the SGE with reporting file (qconf -mconf; > reporting_file=true) and I have activated reporting-variables > (report_variables cpu,np_load_avg,mem_free,virtual_free). > Is there anything else to do in configuration of the SGE? > > When I use the "qstat -f "-command, i can see the job beeing executed > by the grid engine correctly. It seems that the communication GT4 -> > SGE works fine... but the other direction SGE -> GT4 seems not to > work,,, > > Does anybody had this problem, too? > Does anybody have an idea how to solve this problem? > > Many thanks in advance! > > -- > Viele Grüße / Kind regards > > Patrick Heckeler > > Teckstr. 6 > 72074 Tübingen > Germany > > > Mobil: +49172 / 719 23 24 > Homezone: +497071 / 28 47 33 > email: pheckeler [at] gmail [dot] com > skype: p_heckeler > ICQ: 200910972 > -- Viele Grüße Patrick Heckeler Teckstr. 6 72074 Tübingen Germany Mobil: +49172 / 719 23 24 Homezone: +497071 / 28 47 33 email: pheckeler [at] gmail [dot] com skype: p_heckeler ICQ: 200910972
