Check this: http://lists.globus.org/pipermail/gt-user/2009-August/008397.html Same error. Try to follow Wei Guos promising looking link, where a similar error message is explained. The reason might be that your environment variable JAVA_HOME is not set properly. (you posted that earlier: configure: WARNING: the javac in your path is not from your $JAVA_HOME environment )
-Martin simar gill wrote: > Dear all > > I'm installing GT 4.2.1 on an Ubuntu 9.04 , while getting make error. The > error info is pasted below. I think it is caused by configuration. Could > anybody > please help? Thanks very much! > > > .................................. > .................................. > /home/nimbus/work/nimbus/globus-4.2.1/sbin/gpt-build > -srcdir=source-trees/replica/replication/client/java/source gcc32dbg > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR > globus_replica_replication_client_java > SKIPPING REBUILD of noflavor > /home/nimbus/work/nimbus/globus-4.2.1/sbin/gpt-build > -srcdir=source-trees/ws-gram/client/c/rendezvous/source gcc32dbg > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR globus_rendezvous > SKIPPING REBUILD of gcc32dbg > /home/nimbus/work/nimbus/globus-4.2.1/sbin/gpt-build > -srcdir=source-trees/gridway gcc32dbg > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR gridway > gpt-build ====> Changing to > /home/nimbus/work/nimbus/gt4.2.1-all-source-installer/source-trees/gridway > gpt-build ====> BUILDING FLAVOR gcc32dbg > /usr/bin/make > make[1]: Entering directory > `/home/nimbus/work/nimbus/gt4.2.1-all-source-installer/source-trees/gridway' > Making all in src > make[2]: Entering directory > `/home/nimbus/work/nimbus/gt4.2.1-all-source-installer/source-trees/gridway/src' > Makefile:1282: warning: overriding commands for target `drmaa/.dirstamp' > Makefile:1238: warning: ignoring old commands for target `drmaa/.dirstamp' > Makefile:1410: warning: overriding commands for target `cmds/.dirstamp' > Makefile:1393: warning: ignoring old commands for target `cmds/.dirstamp' > Makefile:1465: warning: overriding commands for target `em_mad/.dirstamp' > Makefile:1456: warning: ignoring old commands for target `em_mad/.dirstamp' > Makefile:1589: warning: overriding commands for target `gwd/.dirstamp' > Makefile:1569: warning: ignoring old commands for target `gwd/.dirstamp' > Makefile:1603: warning: overriding commands for target `scheduler/.dirstamp' > Makefile:1595: warning: ignoring old commands for target `scheduler/.dirstamp' > Makefile:1617: warning: overriding commands for target `test/.dirstamp' > Makefile:1613: warning: ignoring old commands for target `test/.dirstamp' > Makefile:1628: warning: overriding commands for target `tm_mad/.dirstamp' > Makefile:1623: warning: ignoring old commands for target `tm_mad/.dirstamp' > /bin/bash ../libtool --tag=CC --mode=compile /usr/bin/gcc > -DPACKAGE_NAME=\"GridWay\" -DPACKAGE_TARNAME=\"gridway\" > -DPACKAGE_VERSION=\"5.4.0\" -DPACKAGE_STRING=\"GridWay\ 5.4.0\" > -DPACKAGE_BUGREPORT=\"[email protected]\" -DSTDC_HEADERS=1 > -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 > -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 > -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DPACKAGE=\"gw\" -DVERSION=\"5.4.0\" > -DHAVE_LIBPTHREAD=1 -DHAVE_ALLOCA_H=1 -DHAVE_ALLOCA=1 -DHAVE_DIRENT_H=1 > -DSTDC_HEADERS=1 -DHAVE_SYS_WAIT_H=1 -DHAVE_ARPA_INET_H=1 -DHAVE_FCNTL_H=1 > -DHAVE_INTTYPES_H=1 -DHAVE_LIBINTL_H=1 -DHAVE_LIMITS_H=1 -DHAVE_NETDB_H=1 > -DHAVE_NETINET_IN_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 > -DHAVE_SYS_SOCKET_H=1 -DHAVE_UNISTD_H=1 -DTIME_WITH_SYS_TIME=1 > -DHAVE_MBSTATE_T=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 > -DHAVE_WORKING_FORK=1 -DHAVE_SYS_SELECT_H=1 -DHAVE_SYS_SOCKET_H=1 > -DSELECT_TYPE_ARG1=int -DSELECT_TYPE_ARG234=\(fd_set\ \*\) > -DSELECT_TYPE_ARG5=\(struct\ timeval\ \*\) -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 > -DHAVE_VPRINTF=1 -DHAVE_DUP2=1 -DHAVE_GETCWD=1 -DHAVE_GETHOSTBYNAME=1 > -DHAVE_GETHOSTNAME=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_MEMSET=1 -DHAVE_REALPATH=1 > -DHAVE_SELECT=1 -DHAVE_SOCKET=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 > -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -I. -I. > -I../include -I/usr/include -I/usr/include/linux > -I/home/nimbus/work/nimbus/globus-4.2.1/include > -I/home/nimbus/work/nimbus/globus-4.2.1/include/gcc32dbg -g -Wall > -DGW_GLOBUS_DIRS -c -o > ./common/__srcdir__drmaa_libdrmaa___GLOBUS_FLAVOR_NAME__la-gw_file_parser.lo > `test -f './common/gw_file_parser.c' || echo './'`./common/gw_file_parser.c > /usr/bin/gcc -DPACKAGE_NAME=\"GridWay\" -DPACKAGE_TARNAME=\"gridway\" > -DPACKAGE_VERSION=\"5.4.0\" "-DPACKAGE_STRING=\"GridWay 5.4.0\"" > -DPACKAGE_BUGREPORT=\"[email protected]\" -DSTDC_HEADERS=1 > -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 > -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 > -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DPACKAGE=\"gw\" -DVERSION=\"5.4.0\" > -DHAVE_LIBPTHREAD=1 -DHAVE_ALLOCA_H=1 -DHAVE_ALLOCA=1 -DHAVE_DIRENT_H=1 > -DSTDC_HEADERS=1 -DHAVE_SYS_WAIT_H=1 -DHAVE_ARPA_INET_H=1 -DHAVE_FCNTL_H=1 > -DHAVE_INTTYPES_H=1 -DHAVE_LIBINTL_H=1 -DHAVE_LIMITS_H=1 -DHAVE_NETDB_H=1 > -DHAVE_NETINET_IN_H=1 -DHAVE_STDDEF_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 > -DHAVE_SYS_SOCKET_H=1 -DHAVE_UNISTD_H=1 -DTIME_WITH_SYS_TIME=1 > -DHAVE_MBSTATE_T=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 > -DHAVE_WORKING_FORK=1 -DHAVE_SYS_SELECT_H=1 -DHAVE_SYS_SOCKET_H=1 > -DSELECT_TYPE_ARG1=int "-DSELECT_TYPE_ARG234=(fd_set *)" > "-DSELECT_TYPE_ARG5=(struct timeval *)" -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 > -DHAVE_VPRINTF=1 -DHAVE_DUP2=1 -DHAVE_GETCWD=1 -DHAVE_GETHOSTBYNAME=1 > -DHAVE_GETHOSTNAME=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_MEMSET=1 -DHAVE_REALPATH=1 > -DHAVE_SELECT=1 -DHAVE_SOCKET=1 -DHAVE_STRCASECMP=1 -DHAVE_STRCHR=1 > -DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRRCHR=1 -DHAVE_STRSTR=1 -I. -I. > -I../include -I/usr/include -I/usr/include/linux > -I/home/nimbus/work/nimbus/globus-4.2.1/include > -I/home/nimbus/work/nimbus/globus-4.2.1/include/gcc32dbg -g -Wall > -DGW_GLOBUS_DIRS -c ./common/gw_file_parser.c -fPIC -DPIC -o > ./common/.libs/__srcdir__drmaa_libdrmaa___GLOBUS_FLAVOR_NAME__la-gw_file_parser. > o > In file included from /usr/include/stdio.h:75, > from ./common/gw_file_parser.c:18: > /usr/include/libio.h:332: error: expected specifier-qualifier-list before > 'size_t' > /usr/include/libio.h:364: error: expected declaration specifiers or '...' > before > 'size_t' > /usr/include/libio.h:373: error: expected declaration specifiers or '...' > before > 'size_t' > /usr/include/libio.h:493: error: expected '=', ',', ';', 'asm' or > '__attribute__' before '_IO_sgetn' > In file included from ./common/gw_file_parser.c:18: > /usr/include/stdio.h:312: error: expected declaration specifiers or '...' > before > 'size_t' > /usr/include/stdio.h:319: error: expected declaration specifiers or '...' > before > 'size_t' > /usr/include/stdio.h:361: error: expected declaration specifiers or '...' > before > 'size_t' > /usr/include/stdio.h:363: error: format string argument not a string type > /usr/include/stdio.h:365: error: expected declaration specifiers or '...' > before > 'size_t' > /usr/include/stdio.h:678: error: expected '=', ',', ';', 'asm' or > '__attribute__' before 'fread' > /usr/include/stdio.h:684: error: expected '=', ',', ';', 'asm' or > '__attribute__' before 'fwrite' > /usr/include/stdio.h:706: error: expected '=', ',', ';', 'asm' or > '__attribute__' before 'fread_unlocked' > /usr/include/stdio.h:708: error: expected '=', ',', ';', 'asm' or > '__attribute__' before 'fwrite_unlocked' > In file included from ./common/gw_file_parser.c:20: > /usr/include/stdlib.h:140: error: expected '=', ',', ';', 'asm' or > '__attribute__' before '__ctype_get_mb_cur_max' > In file included from /usr/include/sys/types.h:133, > from /usr/include/stdlib.h:320, > from ./common/gw_file_parser.c:20: > /usr/include/linux/time.h:10: error: expected specifier-qualifier-list before > 'time_t' > /usr/include/linux/time.h:16: error: expected specifier-qualifier-list before > 'time_t' > In file included from /usr/include/sys/select.h:46, > from /usr/include/sys/types.h:220, > from /usr/include/stdlib.h:320, > from ./common/gw_file_parser.c:20: > /usr/include/bits/time.h:70: error: redefinition of 'struct timeval' > In file included from ./common/gw_file_parser.c:20: > /usr/include/stdlib.h:337: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:367: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:369: error: nonnull argument with out-of-range operand > number (argument 1, operand 4) > /usr/include/stdlib.h:471: error: expected ')' before '__size' > /usr/include/stdlib.h:473: error: expected ')' before '__nmemb' > /usr/include/stdlib.h:485: error: expected declaration specifiers or '...' > before 'size_t' > In file included from /usr/include/stdlib.h:497, > from ./common/gw_file_parser.c:20: > /usr/include/alloca.h:33: error: expected ')' before '__size' > In file included from ./common/gw_file_parser.c:20: > /usr/include/stdlib.h:502: error: expected ')' before '__size' > /usr/include/stdlib.h:507: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:507: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:681: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:681: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:682: error: nonnull argument with out-of-range operand > number (argument 1, operand 5) > /usr/include/stdlib.h:686: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:686: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:687: error: nonnull argument with out-of-range operand > number (argument 1, operand 4) > /usr/include/stdlib.h:759: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:762: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:766: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:770: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:779: error: expected declaration specifiers or '...' > before 'size_t' > /usr/include/stdlib.h:782: error: expected ')' before '*' token > /usr/include/stdlib.h:786: error: expected declaration specifiers or '...' > before 'wchar_t' > /usr/include/stdlib.h:790: error: expected '=', ',', ';', 'asm' or > '__attribute__' before 'mbstowcs' > /usr/include/stdlib.h:793: error: expected '=', ',', ';', 'asm' or > '__attribute__' before 'wcstombs' > ./common/gw_file_parser.c: In function 'gw_parse_line': > ./common/gw_file_parser.c:32: warning: implicit declaration of function > 'strdup' > ./common/gw_file_parser.c:32: warning: incompatible implicit declaration of > built-in function 'strdup' > ./common/gw_file_parser.c:34: warning: implicit declaration of function > 'strtok_r' > ./common/gw_file_parser.c:34: warning: assignment makes pointer from integer > without a cast > ./common/gw_file_parser.c:38: warning: implicit declaration of function > 'strcasecmp' > ./common/gw_file_parser.c:40: warning: implicit declaration of function > 'strchr' > ./common/gw_file_parser.c:40: warning: incompatible implicit declaration of > built-in function 'strchr' > ./common/gw_file_parser.c: In function 'gw_parse_file': > ./common/gw_file_parser.c:74: warning: incompatible implicit declaration of > built-in function 'strchr' > make[2]: *** > [common/__srcdir__drmaa_libdrmaa___GLOBUS_FLAVOR_NAME__la-gw_file_parser.lo] > Error 1 > make[2]: Leaving directory > `/home/nimbus/work/nimbus/gt4.2.1-all-source-installer/source-trees/gridway/src' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory > `/home/nimbus/work/nimbus/gt4.2.1-all-source-installer/source-trees/gridway' > > ERROR: Build has failed > make: *** [gridway] Error 2 > > > Regards > Simar Virk -- Martin Feller The Globus Alliance Computation Institute at University of Chicago Mathematics & Computer Science Division at Argonne National Laboratory Phone: 630 252-4826
