guix_mirror_bot pushed a commit to branch master
in repository guix.
commit e5df48a1c9df90b8df02606fac8323f4455007e8
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Mon Oct 6 00:22:41 2025 +0100
gnu: python-cgatcore: Update to 0.6.16.
* gnu/packages/bioinformatics.scm (python-cgatcore): Update to 0.6.16.
[arguments] <test-flags>: Ignore not compatible test file.
[native-inputs]: Remove python-wheel.
Change-Id: Iec565987285443ea7303c44fe7eb0c8c967a5852
---
gnu/packages/bioinformatics.scm | 16 +++++++++-------
1 file changed, 9 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6486359af5..dbb99555b7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -23869,7 +23869,7 @@ coordinates between different assemblies.")
(define-public python-cgatcore
(package
(name "python-cgatcore")
- (version "0.6.15")
+ (version "0.6.16")
;; The version of pypi does not include test data.
(source (origin
(method git-fetch)
@@ -23879,12 +23879,15 @@ coordinates between different assemblies.")
(file-name (git-file-name name version))
(sha256
(base32
- "103hpdnkqr3a34blbicshk56j36g652s0g1zi9isppc5dngn0s18"))))
+ "0kvfb6fpfncdfb8wjmn7n2vmqk3wd7sdrfw1rhlihfdxbfzb5fa8"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
- '(list "-k"
+ ;; Failed: 'yield' keyword is allowed in fixtures, but not in tests
+ ;; (test_import)
+ '(list "--ignore=tests/test_import.py"
+ "-k"
(string-append
;; This test actually does what it should, but the check fails
with
;; TypeError: cannot unpack non-iterable Namespace object
@@ -23913,12 +23916,11 @@ coordinates between different assemblies.")
(("import sys" m)
(string-append "import apsw\n" m))))))))
(native-inputs
- (list python-pytest
+ (list inetutils
lsof
- inetutils
openssl
- python-setuptools
- python-wheel))
+ python-pytest
+ python-setuptools))
(inputs (list time))
(propagated-inputs
(list python-apsw
