guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 9b96e4d74e0de039bc734747be51ddd4b738dbff
Author: Nicolas Graves <[email protected]>
AuthorDate: Wed Oct 8 23:48:32 2025 +0200
gnu: python-pybiomart: Remove development native-inputs.
* gnu/packages/bioinformatics.scm (python-pybiomart)[native-inputs]:
Remove python-bumpversion, python-pytest-cov, python-coveralls and
python-wheel.
[source]: Switch to git-fetch.
[arguments]: Relocate field.
Change-Id: I60065f76d561c53bd34832f88fea05ac6b58f24f
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++--------------
1 file changed, 13 insertions(+), 14 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a1e58814ba..43439000e2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3756,33 +3756,32 @@ the managed genomes, STAR indexing and mapping and
more.")
(version "0.2.0")
(source
(origin
- (method url-fetch)
- (uri (pypi-uri "pybiomart" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/jrderuiter/pybiomart";)
+ (commit version)))
+ (file-name (git-file-name name version))
(sha256
- (base32 "1znq4msa0ibjxk1yirbrfd09w9zfn0jrgna6qrq0d0i1p46w5sp9"))))
+ (base32 "1x5rd33sa0gwj4nizn02lsc675bbzsspz74f38mp0fbxdp7qnxv8"))))
(build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ ;; Attempts to access the web.
+ #~(list "--ignore=tests/test_dataset.py")))
(propagated-inputs
(list python-future
python-pandas
python-requests
python-requests-cache))
(native-inputs
- (list python-bumpversion
- python-pytest
- python-pytest-cov
+ (list python-pytest
python-pytest-helpers-namespace
python-pytest-mock
- python-coveralls
python-setuptools
python-sphinx
python-sphinx-autobuild
- python-sphinx-rtd-theme
- python-wheel))
- (arguments
- (list
- #:test-flags
- ;; Attempts to access the web.
- #~(list "--ignore=tests/test_dataset.py")))
+ python-sphinx-rtd-theme))
(home-page "https://github.com/jrderuiter/pybiomart";)
(synopsis "A simple pythonic interface to biomart")
(description
