guix_mirror_bot pushed a change to branch python-team
in repository guix.
discard a065b7b7eb gnu: python-pandera: Update to 0.27.1.
discard fc2834ceaf gnu: pyscenic: Add missing python-diptest.
discard ded3f820ef gnu: Add python-diptest.
discard dfaf3aa26a gnu: python-scikit-bio: Update to 0.7.1.post1.
discard 7643e139d3 gnu: endgame-singularity: Update to 1.1.
discard ce930f0038 gnu: python-biom-format: Update to 2.1.17.
discard 64769dfb03 gnu: Add python-anndata-minimal.
discard 7bdfa42496 gnu: python-anndata: Update to 0.12.7.
discard 92b34ddfda gnu: python-awkward: Update to 2.8.5.
discard 63114a3df1 gnu: python-awkward-cpp: Update to 47.
discard e527c506db gnu: crossmap: Update to 0.7.3.
discard 28831ad174 gnu: python-pynbody: Use python-ipython-minimal for tests.
discard 87e437d81c gnu: python-pycollada: Update to 0.9.2.
discard 4013fcdba6 gnu: python-notebook: Skip one test.
discard 41f7a70028 gnu: python-jupyter-console: Move to jupyter.
discard 6c5b949eed gnu: python-jupyter-console: Update to 6.6.3.
discard b722004c96 gnu: python-ipykernel: Update to 7.1.0.
discard 36190e270d gnu: python-jupyter-client: Update to 8.7.0.
discard 876e6b471a gnu: Add python-pytest-jupyter-minimal.
discard f6664678b2 gnu: Remove python-jupyter-console-minimal.
discard ed0ae2d8f9 gnu: python-jupyter-client: Move to jupyter.
discard 0a2a73f37b gnu: python-jupyter-client: Simplfy bootstrapping.
discard c92710662f gnu: python-jupyter-core: Update to 5.9.1.
discard 2ed4cbf668 gnu: python-jupyter-core: Move to jupyter.
discard f9bae59cc9 gnu: Add python-ipython-minimal.
discard a6d6735ef9 gnu: python-ipython: Update to 9.8.0.
discard efeffaa0f0 gnu: python-contourpy: Update to 1.3.3.
discard ce10d43c4d gnu: python-pythran: Clean up artifacts.
discard c4e5126043 gnu: python-pytest-doctestplus: Update to 1.6.0.
discard 44a0dad99b gnu: python-pytest-randomly: Move to python-check.
discard 508d6a9c6f gnu: python-pytest-randomly: Update to 4.0.1.
discard c76335d463 gnu: python-stcal: Adjust relax-requirments phase.
discard b90d8f809e gnu: python-jmespath: Switch to pyproject.
discard 40f6272541 gnu: python-specutils: Remove relax-requirements phase.
discard 86ae45611b gnu: python-asap3: Update to 3.13.10.
discard 3e134b8ff8 gnu: python-ase: Update to 3.26.0.
discard 09faef98c3 gnu: urh: Use python-numpy@1.
discard 05b07194a7 gnu: python-loompy: Update to 3.0.8.
discard 1e74ce5825 gnu: python-hnswlib: Update to 0.8.0.
discard 73f64cb055 gnu: python-romancal: Remove relax-requirements phase.
discard 2d87f30404 gnu: python-regions: Update to 0.11.
discard 7f70f41528 gnu: python-kalepy: Skip 5 tests.
discard 8c4ccf8498 gnu: python-sunkit-spex: Update to 0.4.0-0.bb544c4.
discard c633e3b723 gnu: python-numdifftools: Update to 0.9.42.
discard 8e69672da9 gnu: python-meshio: Skip some tests.
discard 194c4eb3f3 gnu: python-lofar-h5plot: Use python-numpy@1.
discard 3fefaaa871 gnu: python-losoto: Update to 2.6.0.
discard b726a43ef8 gnu: Add python-lofar-parameterset.
discard 2e85b902e4 gnu: python-glue-astronomy: Skip 3 tests.
discard 295b3a8b0c gnu: python-seaborn: Skip 3 tests.
discard 144281b8f6 gnu: veusz: Update to 4.2.
discard c22005e119 gnu: websockify: Update to 0.13.0.
discard 302c14164f gnu: python-jwcrypto: Adjust inputs.
discard 78fe8576b6 gnu: python-modin: Update to 0.37.1.
discard caee8da6ec gnu: python-pyopengl: Skip one test.
discard fe0c64ebf1 gnu: python-cleanlab: Fix build.
discard 116a601797 gnu: python-arviz: Update to 0.22.0.
discard cd8fbb4d62 gnu: python-arboreto: Update to 0.1.6-0.79f916b.
discard 9533d7449a gnu: python-naima: Update to 0.10.3.
discard 55d990f898 gnu: python-xarray-einstats: Update to 0.9.1.
discard 80ff2aea2e gnu: python-spectral-cube: Update to 0.6.7.
discard 729843e3cd gnu: python-reproject: Update to 0.19.0.
discard b6b2aa148e gnu: python-dask-image: Update to 2025.11.0.
discard 8e6458a655 gnu: python-xarray: Update to 2025.12.0.
discard bcea5f78a8 gnu: catch2: Update to 2.13.10.
discard aad120fe8f gnu: python-numba: Update to 0.62.1.
discard 10e0acfb34 gnu: python-llvmlite: Update to 0.45.0.
discard d1d7dc6585 gnu: pyscenic: Update to 0.12.1-2.06bafba4.
discard 4f53c34f25 gnu: python-tables: Update to 3.10.2-0.aad9079.
discard 9a50c81e68 gnu: python-annoy: Add python-h5py.
discard f50613fff4 gnu: cpat: Update to 3.0.5.
discard 8387747c82 gnu: python-linetools: Skip 2 tests.
discard 7813efc4a8 gnu: python-kanon: Use python-numpy@1.
discard 42fa9a3864 gnu: python-zodipy: Remove relax-requirements phase.
discard 8c6c997741 gnu: python-jacobi: Fix tests.
discard 90366efaf0 gnu: python-statmorph: Adjust inputs.
discard c208966a07 gnu: python-scikit-image-next: Deprecate by
python-scikit-image.
discard 58b6a6b348 gnu: python-scikit-image: Update to 0.25.2.
discard 3c3617d977 gnu: python-fits-schema: Update to 0.5.6-0.ccffe04.
discard 0794078d2c gnu: python-astrodata: Use python-numpy@1.
discard cd981601d8 gnu: python-jwst: Remove relax-requirements phase.
discard c12aa37dc7 gnu: python-gwcs: Remove relax-requirements phase.
discard 00d7d48ca3 gnu: python-fgivenx: Update to 2.4.2-0.cf51dbf.
discard 3504397a06 gnu: genetic: Use python-pynbody@2.
discard b1ecdfc0bc gnu: python-esutil: Fix build with gcc-14.
discard 908e7f3e94 gnu: python-nox: Update to 2025.11.12.
discard ef48924bd2 gnu: python-ctapipe: Update to 0.28.0.
discard c93e172d47 gnu: python-cesium: Update to 0.12.4.
discard c4d2537da2 gnu: blender: Use python-numpy@1.
discard b58a294885 gnu: checkm: Update to 1.2.4.
discard 1cbded5af5 gnu: python-blacksheep: Update to 2.4.5.
discard 39127dd429 gnu: didjvu: Update to 0.11.0.
discard 75d54596f6 gnu: Add python-py3exiv2.
discard 6a8fbef8f1 gnu: python-guardpost: Update to 1.0.4.
discard 0fdf339752 gnu: python-astroml: Skip 2 tests.
discard e3575d42bd gnu: python-stwcs: Remove relax-requirements phase.
discard 898b8a383d gnu: python-cloudpathlib: Fix tests.
discard 666f3e8fd3 gnu: python-algopy: Update to 0.7.2.
discard e3ed5fd55e gnu: python-dendropy: Update to 5.0.8.
discard 736b50c724 gnu: python-django-ninja: Update to 1.5.1.
discard 3e2b1a2e8d gnu: python-xmp-toolkit: Update to 2.1.0.
discard 0cab063087 gnu: python-astropy-6: Skip some tests.
discard a80db70d7d gnu: python-fastapi: Update to 0.124.0.
discard 45b3257c75 gnu: Add python-pydantic-extra-types.
discard 72e87e4652 gnu: Add python-annotated-doc.
discard 89e1c5aee3 gnu: Add python-cron-converter.
discard 71bcf10e28 gnu: Add python-ulid.
discard 5bf2338e64 gnu: python-casa-formats-io: Fix tests.
discard df4f9fdef0 gnu: python-pydantic-settings: Update to 2.12.0.
discard bba8702e25 gnu: python-netcdf4: Update to 1.7.2.
discard 79662068e5 gnu: netcdf: Update to 4.9.2.
discard 277ba12bd2 gnu: python-blosc2: Update to 3.12.2.
discard b60c49a691 gnu: c-blosc2: Update to 2.22.0.
discard 44f06f3fe9 gnu: python-ndindex: Update to 1.10.1.
discard 08669d4723 gnu: python-numexpr: Update to 2.14.1.
discard 938e80b3a5 gnu: python-distributed: Update to 2025.11.0.
discard 3c84a2ee47 gnu: python-scikit-learn: Update to 1.7.2.
discard 2183906e02 gnu: python-nbval: Reduce closure size.
discard 689e557898 gnu: python-pydantic-2: Deprecate by python-pydantic.
discard b021f02dc2 gnu: Add python-pydantic-1.
discard e4635107d0 gnu: python-pydantic: Update to 2.12.5.
discard ad75763f90 gnu: python-pydantic-core: Update to 2.41.5.
discard 8e7512785d gnu: Add python-pytest-run-parallel.
discard 18d5488938 gnu: Add python-typing-inspection.
discard d5b72bebec gnu: python-dask: Update to 2025.11.0.
discard fde81af46d gnu: python-setuptools-scm-next: Undeprecate.
discard 7e02d68ed4 gnu: python-blosc: Adjust inputs.
discard b09d7fe022 gnu: python-h5py: Update to 3.15.1.
discard 1dbfa3c985 gnu: python-pytest-regressions: Move to python-check.
discard 7101b438b3 gnu: python-pytest-regressions: Update to 2.8.3.
discard 2124079c10 gnu: python-scipy: Update to 1.16.3.
discard 4d4b1ab237 gnu: python-msgpack: Update to 1.1.2.
discard b95a58d6d9 gnu: python-pandas: Update to 2.3.3.
discard a55463a78e gnu: python-matplotlib: Update to 3.10.8.
discard 37c0fde17a gnu: python-httptools: Update to 0.7.1.
discard 2d81b705b5 gnu: python-numpy-2: Deprecate by python-numpy.
discard 73fcd257ac gnu: python-numpy: Set NumPy 2 as default.
discard b2b8533ffb gnu: Add python-cython-next.
discard e5b8be5b0c gnu: python-cython: Update to 3.1.7.
discard bc8cb52582 gnu: Add python-setuptools-79.
add c506c884c8 gnu: Add libnbd.
add 27f1f774ed gnu: Add qatlib.
add b1674ee746 gnu: Add qatzip.
add 734eed9746 gnu: Add boost-1.88.
add d564b1c534 gnu: Add rocksdb-for-ceph.
add 6b371df5d4 gnu: ceph: Update to 20.3.0 and reinstate parallel build.
add cf9a48f6fc gnu: ceph: Update home page.
add 38a67bf991 gnu: podman: Update to 5.7.1.
add 4844f2af2e gnu: qtspell: Update to 1.0.2 and switch to Qt6.
add 577577916f gnu: gimagereader: Update to 3.4.3 and switch to Qt6.
add ea031339ff gnu: go-1.25: Update to 1.25.5.
add 0f78186bf2 gnu: nomacs: Update to 3.22.0.
add d88ecb34b4 gnu: capnproto: Update to 1.3.0.
add 8809a31c76 gnu: caja: Fix search-paths environment variable.
new 3fe458c500 gnu: Add python-setuptools-79.
new 1b2cad291a gnu: python-cython: Update to 3.1.7.
new 126c229eb7 gnu: Add python-cython-next.
new 533c01158c gnu: python-numpy: Set NumPy 2 as default.
new 222a85c434 gnu: python-numpy-2: Deprecate by python-numpy.
new 195506200e gnu: python-httptools: Update to 0.7.1.
new 4758a76a30 gnu: python-matplotlib: Update to 3.10.8.
new e77ff83886 gnu: python-pandas: Update to 2.3.3.
new 90b13fa6ba gnu: python-msgpack: Update to 1.1.2.
new 46391b3877 gnu: python-scipy: Update to 1.16.3.
new ab716c029c gnu: python-pytest-regressions: Update to 2.8.3.
new f4d492caf8 gnu: python-pytest-regressions: Move to python-check.
new 1dbfdbaee0 gnu: python-h5py: Update to 3.15.1.
new f8f401e086 gnu: python-blosc: Adjust inputs.
new 566d1b2c32 gnu: python-setuptools-scm-next: Undeprecate.
new 9a5d722fe5 gnu: python-dask: Update to 2025.11.0.
new 849021b791 gnu: Add python-typing-inspection.
new 22ce8ac217 gnu: Add python-pytest-run-parallel.
new 1ad87827c6 gnu: python-pydantic-core: Update to 2.41.5.
new 9f11baeb7a gnu: python-pydantic: Update to 2.12.5.
new 13e1588e11 gnu: Add python-pydantic-1.
new 0e51ac12a3 gnu: python-pydantic-2: Deprecate by python-pydantic.
new 51a3665e04 gnu: python-nbval: Reduce closure size.
new 4169a1e996 gnu: python-scikit-learn: Update to 1.7.2.
new 1f21e4572f gnu: python-distributed: Update to 2025.11.0.
new 968ef118da gnu: python-numexpr: Update to 2.14.1.
new cc3f7b5dc1 gnu: python-ndindex: Update to 1.10.1.
new 3f06e28df5 gnu: c-blosc2: Update to 2.22.0.
new 71ffb40cbc gnu: python-blosc2: Update to 3.12.2.
new f44b5db492 gnu: netcdf: Update to 4.9.2.
new 480220585f gnu: python-netcdf4: Update to 1.7.2.
new 729a619d71 gnu: python-pydantic-settings: Update to 2.12.0.
new 5a1a288ecb gnu: python-casa-formats-io: Fix tests.
new a8ac6ec911 gnu: Add python-ulid.
new 278205396e gnu: Add python-cron-converter.
new 03b5194bf7 gnu: Add python-annotated-doc.
new 7d85255719 gnu: Add python-pydantic-extra-types.
new bf2b4b160b gnu: python-fastapi: Update to 0.124.0.
new 9d6d4722b1 gnu: python-astropy-6: Skip some tests.
new 082b034c67 gnu: python-xmp-toolkit: Update to 2.1.0.
new ebeebceae7 gnu: python-django-ninja: Update to 1.5.1.
new a6e67f20e2 gnu: python-dendropy: Update to 5.0.8.
new 2b38b134ba gnu: python-algopy: Update to 0.7.2.
new 195e565ed9 gnu: python-cloudpathlib: Fix tests.
new d5b49988d4 gnu: python-stwcs: Remove relax-requirements phase.
new 35c0d74a83 gnu: python-astroml: Fix build.
new 8703cbcf7d gnu: python-guardpost: Update to 1.0.4.
new 95f3ac959d gnu: Add python-py3exiv2.
new 5419147b5b gnu: didjvu: Update to 0.11.0.
new 7e4d544609 gnu: python-blacksheep: Update to 2.4.5.
new 130267c1e8 gnu: checkm: Update to 1.2.4.
new 571d2e43b9 gnu: blender: Use python-numpy@1.
new 7d46b83cb0 gnu: python-cesium: Update to 0.12.4.
new b3726ba0f2 gnu: python-ctapipe: Update to 0.28.0.
new e0f3f6ba6f gnu: python-nox: Update to 2025.11.12.
new aee685487c gnu: python-esutil: Fix build with gcc-14.
new 62cecf9ea7 gnu: genetic: Use python-pynbody@2.
new 4a4a6570a6 gnu: python-fgivenx: Update to 2.4.2-0.cf51dbf.
new b968f51b88 gnu: python-gwcs: Remove relax-requirements phase.
new 2e09f12728 gnu: python-jwst: Remove relax-requirements phase.
new b216970d32 gnu: python-astrodata: Use python-numpy@1.
new 4a91bc56c9 gnu: python-fits-schema: Update to 0.5.6-0.ccffe04.
new be6defc124 gnu: python-scikit-image: Update to 0.25.2.
new 3b6372e799 gnu: python-scikit-image-next: Deprecate by
python-scikit-image.
new eca36fbd67 gnu: python-statmorph: Adjust inputs.
new b727613b94 gnu: python-jacobi: Fix tests.
new 613ab62b12 gnu: python-zodipy: Remove relax-requirements phase.
new 5b52e2f405 gnu: python-kanon: Use python-numpy@1.
new bb1e607a6a gnu: python-linetools: Skip 2 tests.
new 450984ea7e gnu: cpat: Update to 3.0.5.
new 47dcc323ab gnu: python-annoy: Add python-h5py.
new 8e4dfe7d54 gnu: python-tables: Update to 3.10.2-0.aad9079.
new d4c39044c5 gnu: pyscenic: Update to 0.12.1-2.06bafba4.
new f92ebfd7de gnu: python-llvmlite: Update to 0.45.0.
new 2042542b9b gnu: python-numba: Update to 0.62.1.
new 5b6d6f3d71 gnu: catch2: Update to 2.13.10.
new af3134b37d gnu: python-xarray: Update to 2025.12.0.
new 732b5d29a2 gnu: python-dask-image: Update to 2025.11.0.
new 94758a2ec7 gnu: python-reproject: Update to 0.19.0.
new ec755bb49c gnu: python-spectral-cube: Update to 0.6.7.
new a7d8e9c7fe gnu: python-xarray-einstats: Update to 0.9.1.
new 065fa8a891 gnu: python-naima: Update to 0.10.3.
new ee8a9fac84 gnu: python-arboreto: Update to 0.1.6-0.79f916b.
new aac95f8bf7 gnu: python-arviz: Update to 0.22.0.
new c9d27fdb5c gnu: python-cleanlab: Fix build.
new 162c805f92 gnu: python-pyopengl: Skip one test.
new 4d512edcda gnu: python-modin: Update to 0.37.1.
new ecccb52a9a gnu: python-jwcrypto: Adjust inputs.
new 9e1a5112a6 gnu: websockify: Update to 0.13.0.
new 8fff8ab1bd gnu: veusz: Update to 4.2.
new 5406a653ba gnu: python-seaborn: Skip 3 tests.
new 845a51dd60 gnu: python-glue-astronomy: Skip 3 tests.
new f4dbc344df gnu: Add python-lofar-parameterset.
new 8f726915b9 gnu: python-losoto: Update to 2.6.0.
new b50f1fc847 gnu: python-lofar-h5plot: Use python-numpy@1.
new b2351f86b5 gnu: python-meshio: Skip some tests.
new 055f471a29 gnu: python-numdifftools: Update to 0.9.42.
new cc13a6a6ca gnu: python-sunkit-spex: Update to 0.4.0-0.bb544c4.
new b79b81c374 gnu: python-kalepy: Skip 5 tests.
new 73e1e6bcc0 gnu: python-regions: Update to 0.11.
new 56588066c5 gnu: python-romancal: Remove relax-requirements phase.
new faa6d58e45 gnu: python-hnswlib: Update to 0.8.0.
new 573d7f467b gnu: python-loompy: Update to 3.0.8.
new e8384605a7 gnu: urh: Use python-numpy@1.
new 92114254d3 gnu: python-ase: Update to 3.26.0.
new a4b027629b gnu: python-asap3: Update to 3.13.10.
new 7275c01a3b gnu: python-specutils: Remove relax-requirements phase.
new cbd72037ce gnu: python-jmespath: Switch to pyproject.
new 879b28218a gnu: python-stcal: Adjust relax-requirments phase.
new 752c300010 gnu: python-pytest-randomly: Update to 4.0.1.
new 7a280191fd gnu: python-pytest-randomly: Move to python-check.
new 11c2e40965 gnu: python-pytest-doctestplus: Update to 1.6.0.
new de70451eb3 gnu: python-pythran: Clean up artifacts.
new 8a10d588c8 gnu: python-contourpy: Update to 1.3.3.
new 41a1db32b9 gnu: python-ipython: Update to 9.8.0.
new 9cab5c4828 gnu: Add python-ipython-minimal.
new 5c9357b428 gnu: python-jupyter-core: Move to jupyter.
new ddc0eb2ce7 gnu: python-jupyter-core: Update to 5.9.1.
new ca9315a62e gnu: python-jupyter-client: Simplfy bootstrapping.
new 248f569bfc gnu: python-jupyter-client: Move to jupyter.
new f8ec20b06a gnu: Remove python-jupyter-console-minimal.
new a94e99f115 gnu: Add python-pytest-jupyter-minimal.
new d04252886a gnu: python-jupyter-client: Update to 8.7.0.
new 87a8b605c2 gnu: python-ipykernel: Update to 7.1.0.
new 4e0cf28937 gnu: python-jupyter-console: Update to 6.6.3.
new 4665388790 gnu: python-jupyter-console: Move to jupyter.
new fb3cdbbd0b gnu: python-notebook: Skip one test.
new eacab19be9 gnu: python-pycollada: Update to 0.9.2.
new a2aa0ffac2 gnu: python-pynbody: Use python-ipython-minimal for tests.
new 0719caf399 gnu: crossmap: Update to 0.7.3.
new 8306f01352 gnu: python-awkward-cpp: Update to 47.
new ce08f410ea gnu: python-awkward: Update to 2.8.5.
new b5999347e7 gnu: python-anndata: Update to 0.12.7.
new 3cd72ebf50 gnu: Add python-anndata-minimal.
new 69e7618115 gnu: python-biom-format: Update to 2.1.17.
new eb48a3b23a gnu: endgame-singularity: Update to 1.1.
new 6dcd479406 gnu: python-scikit-bio: Update to 0.7.1.post1.
new 85b5543295 gnu: Add python-diptest.
new ab51291805 gnu: pyscenic: Add missing python-diptest.
new 2b394444e7 gnu: python-pandera: Update to 0.27.1.
new 89fe914770 gnu: python-slicerator: Switch to pyproject.
new deb033c879 gnu: python-fbpca: Fix tests.
new c162249c71 gnu: python-biopython: Update to 1.86.
This update added new revisions after undoing existing revisions.
That is to say, some revisions that were in the old version of the
branch are not in the new version. This situation occurs
when a user --force pushes a change and generates a repository
containing something like this:
* -- * -- B -- O -- O -- O (a065b7b7eb)
\
N -- N -- N refs/heads/python-team (c162249c71)
You should already have received notification emails for all of the O
revisions, and so the following emails describe only the N revisions
from the common base, B.
Any revisions marked "omit" are not gone; other references still
refer to them. Any revisions marked "discard" are gone forever.
The 143 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
gnu/local.mk | 3 +-
gnu/packages/astronomy.scm | 3 +-
gnu/packages/bioinformatics.scm | 33 +-
gnu/packages/boost.scm | 17 +-
gnu/packages/compression.scm | 42 +++
gnu/packages/containers.scm | 4 +-
gnu/packages/crypto.scm | 42 +++
gnu/packages/databases.scm | 21 ++
gnu/packages/golang.scm | 4 +-
gnu/packages/image-viewers.scm | 51 +--
gnu/packages/mate.scm | 2 +-
gnu/packages/ocr.scm | 11 +-
.../patches/ceph-disable-cpu-optimizations.patch | 43 ---
gnu/packages/patches/ceph-fix-cmake.patch | 22 ++
.../patches/ceph-fix-for-newer-boost.patch | 50 ---
gnu/packages/python-science.scm | 6 +-
gnu/packages/python-xyz.scm | 6 +-
gnu/packages/qt.scm | 11 +-
gnu/packages/serialization.scm | 4 +-
gnu/packages/storage.scm | 404 ++++++++++++---------
20 files changed, 445 insertions(+), 334 deletions(-)
delete mode 100644 gnu/packages/patches/ceph-disable-cpu-optimizations.patch
create mode 100644 gnu/packages/patches/ceph-fix-cmake.patch
delete mode 100644 gnu/packages/patches/ceph-fix-for-newer-boost.patch
