guix_mirror_bot pushed a change to branch python-team
in repository guix.
discard 963d91b048 gnu: python-hic2cool: Fix tests.
discard 284062c70a gnu: python-hdf5storage: Use pythno-numpy@1.
discard 28c99c659d gnu: python-dcor: Use python-numpy@1.
discard 3e32ec6ab6 gnu: coda: Use python-numpy@1.
discard 33df47c529 gnu: dolphin-emu: Use python-numpy@1.
discard 50f6dd9257 gnu: Remove python-statannot.
discard 9b743b951c gnu: Add python-statannotations.
discard e29ec7774a gnu: python-scikit-surprise: Use python-numpy@1.
discard cfc9efa77e gnu: python-spisea: Use python-numpy@1.
discard b585b332ac gnu: python-pysynphot: Update to 2.0.0-1.a5e76c3.
discard ce64f72016 gnu: python-paramz Move to machinve-learning.
discard 66c8b7f07a gnu: python-gpy: Use python-numpy@1.
discard 35dd02cc39 gnu: python-paramz: Use python-numpy@1.
discard b708174e29 gnu: rdkit: Use python-numpy@1.
discard 6ac9c34f00 gnu: boost-numpy: Use python-numpy@1.
discard 9f4dcf8081 gnu: python-scikit-learn-1.6: Skip 3 more tests.
discard 4387803359 gnu: python-vector: Update to 1.7.0.
discard 0615322586 gnu: python-papermill: Reduce closure size; skip 2 tests.
discard 9cb8e28930 gnu: python-glue-qt: Relax requirements for ipython version.
discard 3d471646a7 gnu: Remove python-xarray-datatree.
discard 5aa2f08230 gnu: python-multiscale-spatial-image: Update to 2.0.3.
discard 9ab413e7d6 gnu: Add python-xarray-dataclass.
discard 4437465bad gnu: python-fenics-ffc: Use python-numpy@1.
discard f0ac84e734 gnu: python-fenics-ufl-2019: Use python-numpy@1.
discard ffdb7a65f7 gnu: python-episcanpy: Use python-numpy@1.
discard bd41ecd359 gnu: python-utilities-awetzel: Remove relax-requirements
phase.
discard 4c13f6a1ad gnu: python-specreduce: Remove relax-requirements phase.
discard 53e42070c8 gnu: python-sncosmo: Adjust phases.
discard 11a9e7abf1 gnu: python-sep: Remove relax-requirements phase.
discard f13307020e gnu: python-gizmo-analysis: Remove relax-requirements phase.
discard ad56a8f6c2 gnu: python-drizzlepac: Update to 3.10.0-0.e01563c.
discard 9acf49eaa5 gnu: Add python-stregion.
discard 482ee03727 gnu: python-drep: Update to 3.6.2-0.7b4b8fb.
discard b668b847e6 gnu: python-mygene: Switch to pyproject.
discard 9a8f7103c4 gnu: python-funsor: Update to 0.4.6.
discard 700c2e00ff gnu: python-deeptools: Update to 3.5.6.
discard 174f966ce8 gnu: python-deepdish: Use python-numpy@1.
discard bc08d1516b gnu: python-tdda: Skip one more test.
discard 42e127cd74 gnu: piglit: Use python-numpy@1.
discard 5d98f0fe76 gnu: cnvkit: Update to 0.9.12-0.52f367b.
discard c66dca639a gnu: python-pyfaidx: Update to 0.9.0.3.
discard fbd3e821ba gnu: python-pomegranate: Move to machine-learning.
discard dcbe6a76ba gnu: python-pomegranate: Update to 1.1.0.
discard 9c9ff1e96a gnu: Add python-apricot-select.
discard 16d3eb4bf6 gnu: python-presto: Improve package, fix tests.
discard 53196a92b3 gnu: python-brian2: Update to 2.10.1.
discard 191725a572 gnu: macs-3: Update to 3.0.3.
discard f675528f5e gnu: python-cellbender: Update to 0.3.2.
discard da7e506c0a gnu: python-captum: Update to 0.8.0-0.4fade3a.
discard 1e1e4d4d75 gnu: mageck: Use python-numpy@1.
discard 666ae5e85b gnu: idr: Fix build.
discard 7a44941580 gnu: python-cnmf: Update to 1.7.0.
discard 57df67350f gnu: python-cooltools: Update to 0.7.1.
discard 8c14a0eab5 gnu: python-magic-impute: Update to 3.0.0.
discard 9ca784e088 gnu: Add python-scprep.
discard 62f9f6636b gnu: python-fcsparser: Use python-numpy@1.
discard 83c4d1bf15 gnu: python-graphtools: Update to 2.1.0.
discard a24bc34481 gnu: python-pygsp: Update to 0.6.0.
discard 049e5a9f11 gnu: Add python-pyunlocbox.
discard f208850a34 gnu: python-verde: Update to 1.8.1.
discard 0845abafa6 gnu: python-metacells: Simplify.
discard 8ae213e473 gnu: python-crosshair: Update to 0.0.101.
discard 21adc894e8 gnu: Add python-pygls.
discard 203482b449 gnu: Add python-lsprotocol.
discard f775b0e0c7 gnu: python-fastcluster: Update to 1.3.0.
discard 78e7ef6568 gnu: python-cvxpy: Update to 1.7.5.
discard 1834f4b4bf gnu: python-scs: Update to 3.2.10.
discard c9da6b43c8 gnu: Add scs.
discard fc7c432d4c gnu: python-osqp: Update to 1.0.5.
discard 08e125b283 gnu: Add osqp.
discard f353820754 gnu: Add qdldl.
discard 895f0e9356 gnu: Remove python-eventio-1.
discard 0a9768b206 gnu: tangos: Update to 1.11.0.
discard af09fb87d1 gnu: python-chaospy: Update to 4.3.21.
discard 08a85a9d8f gnu: python-numpoly: Update to 1.3.4.
discard d413b86c10 gnu: python-pyudev: Update to 0.24.4.
discard 4ce47f429e gnu: python-plotly: Update to 5.24.1.
discard 7b5aa538ab gnu: Add python-array-api-strict.
discard 52b941a7a3 gnu: python-ipywidgets: Update to 8.1.4.
discard de0a1633cf gnu: python-jupyterlab-widgets: Update to 3.0.12.
discard a574f25def gnu: python-vaex-core: Update to 4.19.0.
discard 3e0854361d gnu: htseq: Update to 2.0.9.
discard 2f27ffb52b gnu: python-coolbox: Update to 0.3.9.
discard 8d80939028 gnu: python-cooler: Update to 0.10.4.
discard 6f62f3c3dd gnu: python-circe: Update to 0.3.9.
discard ada908dcf4 gnu: python-scanpy: Update to 1.11.5.
discard b4307feb75 gnu: python-statsmodels: Update to 0.14.5.
discard 689e740253 gnu: python-biopython: Update to 1.86.
discard 5ba2f33fc1 gnu: python-fbpca: Fix tests.
discard b4e49b6ad1 gnu: python-pandera: Update to 0.27.1.
discard b3926c2a55 gnu: pyscenic: Add missing python-diptest.
discard f8abe09c0a gnu: Add python-diptest.
discard d761bc6799 gnu: python-scikit-bio: Update to 0.7.1.post1.
discard 20a42343ac gnu: endgame-singularity: Update to 1.1.
discard f1fd1ce8e3 gnu: python-biom-format: Update to 2.1.17.
discard 99d2bc5303 gnu: Add python-anndata-minimal.
discard fc441d9d0b gnu: python-anndata: Update to 0.12.7.
discard 91d7eb08d4 gnu: python-awkward: Update to 2.8.5.
discard fcb211d9a6 gnu: python-awkward-cpp: Update to 47.
discard 15b8999653 gnu: crossmap: Update to 0.7.3.
discard 15f60fa140 gnu: python-pynbody: Use python-ipython-minimal for tests.
discard 6c2be3cecb gnu: python-pycollada: Update to 0.9.2.
discard e09b1f7082 gnu: python-notebook: Fix build.
discard 99b26709c7 gnu: Add python-jupyter-client-7.
discard 5cbc769c71 gnu: python-jupyter-console: Move to jupyter.
discard 578dbcfee5 gnu: python-jupyter-console: Update to 6.6.3.
discard ce90deb541 gnu: python-ipykernel: Update to 7.1.0.
discard 0a1112e058 gnu: python-jupyter-client: Update to 8.7.0.
discard 120c7e37e6 gnu: Add python-pytest-jupyter-minimal.
discard 6d09edc6d2 gnu: Remove python-jupyter-console-minimal.
discard 0690aa3b08 gnu: python-jupyter-client: Move to jupyter.
discard ca85b8f770 gnu: python-jupyter-client: Simplfy bootstrapping.
discard 362aaacefa gnu: python-jupyter-core: Update to 5.9.1.
discard 64ad78e835 gnu: python-jupyter-core: Move to jupyter.
discard 619cccac9c gnu: Add python-ipython-minimal.
discard b485bc1be7 gnu: python-ipython: Update to 9.8.0.
discard 4a80404f60 gnu: python-contourpy: Update to 1.3.3.
discard 87e08de3ca gnu: python-pythran: Clean up artifacts.
discard 68f77ea7ad gnu: python-pytest-doctestplus: Update to 1.6.0.
discard d08a52cadd gnu: python-pytest-randomly: Move to python-check.
discard ae0cc8f521 gnu: python-pytest-randomly: Update to 4.0.1.
discard 329c1d7df3 gnu: python-stcal: Adjust relax-requirments phase.
discard de95b77506 gnu: python-jmespath: Switch to pyproject.
discard 7c7f9c5c86 gnu: python-specutils: Remove relax-requirements phase.
discard 133edb4c5a gnu: python-asap3: Update to 3.13.10.
discard 93d55f24e2 gnu: python-ase: Update to 3.26.0.
discard 0ccf18113a gnu: urh: Use python-numpy@1.
discard a4d6a0f773 gnu: python-loompy: Update to 3.0.8.
discard afa9524e59 gnu: python-hnswlib: Update to 0.8.0.
discard 5e7059dafd gnu: python-romancal: Remove relax-requirements phase.
discard 8ceeafbcee gnu: python-regions: Update to 0.11.
discard 6198701c0e gnu: python-kalepy: Skip 5 tests.
discard 4e2b25f666 gnu: python-sunkit-spex: Update to 0.4.0-0.bb544c4.
discard 8cf6ffa42a gnu: python-numdifftools: Update to 0.9.42.
discard 97e39a5846 gnu: python-meshio: Skip some tests.
discard bb95923000 gnu: python-lofar-h5plot: Use python-numpy@1.
discard 2a31971b0a gnu: python-losoto: Update to 2.6.0.
discard 7946e566fa gnu: Add python-lofar-parameterset.
discard 8c0872a61b gnu: python-glue-astronomy: Skip 3 tests.
discard 3c74810ce9 gnu: python-seaborn: Skip 3 tests.
discard 77d476af06 gnu: veusz: Update to 4.2.
discard c12c2549e7 gnu: websockify: Update to 0.13.0.
discard 1351547744 gnu: python-jwcrypto: Adjust inputs.
discard ce8efbc6e0 gnu: python-modin: Update to 0.37.1.
discard 196e21d897 gnu: python-pyopengl: Skip one test.
discard 08f34da361 gnu: python-cleanlab: Fix build.
discard ab8717355d gnu: python-arviz: Update to 0.22.0.
discard e372ee5b42 gnu: python-arboreto: Update to 0.1.6-0.79f916b.
discard aac4744834 gnu: python-naima: Update to 0.10.3.
discard ae689e1c59 gnu: python-xarray-einstats: Update to 0.9.1.
discard 3f404c1ce2 gnu: python-spectral-cube: Update to 0.6.7.
discard 41d4bd217d gnu: python-reproject: Update to 0.19.0.
discard 87e9d4459f gnu: python-dask-image: Update to 2025.11.0.
discard 22acafcd78 gnu: python-xarray: Update to 2025.12.0.
discard 56b7d6599e gnu: catch2: Update to 2.13.10.
discard c170d70935 gnu: python-numba: Update to 0.62.1.
discard 641d7a63e3 gnu: python-llvmlite: Update to 0.45.0.
discard 73bf7f5b2b gnu: pyscenic: Update to 0.12.1-2.06bafba4.
discard 87e6fc4ab1 gnu: python-tables: Update to 3.10.2-0.aad9079.
discard 6fe602513f gnu: python-annoy: Add python-h5py.
discard c79f0b86c8 gnu: cpat: Update to 3.0.5.
discard 810f09c097 gnu: python-linetools: Skip 2 tests.
discard c8e20e956d gnu: python-kanon: Use python-numpy@1.
discard 6dcf9e168d gnu: python-zodipy: Remove relax-requirements phase.
discard a7106bdd0f gnu: python-jacobi: Fix tests.
discard 22d5c0656e gnu: python-statmorph: Adjust inputs.
discard ded7878fd4 gnu: python-scikit-image-next: Deprecate by
python-scikit-image.
discard b3713d365a gnu: python-scikit-image: Update to 0.25.2.
discard 971295855b gnu: python-fits-schema: Update to 0.5.6-0.ccffe04.
discard 51d8d3b5a3 gnu: python-astrodata: Use python-numpy@1.
discard 9b13fc5e77 gnu: python-jwst: Remove relax-requirements phase.
discard 6909717b38 gnu: python-gwcs: Remove relax-requirements phase.
discard 8d5506c76c gnu: python-fgivenx: Update to 2.4.2-0.cf51dbf.
discard 76e611e514 gnu: genetic: Use python-pynbody@2.
discard 69b9a2ab9c gnu: python-esutil: Fix build with gcc-14.
discard 44237d817d gnu: python-nox: Update to 2025.11.12.
discard 8a9c8a5946 gnu: python-ctapipe: Update to 0.28.0.
discard e9d212b72f gnu: python-cesium: Update to 0.12.4.
discard 94d6a3cf81 gnu: blender: Use python-numpy@1.
discard deedd20158 gnu: checkm: Update to 1.2.4.
discard ea4e87582f gnu: python-blacksheep: Update to 2.4.5.
discard d5081fbc66 gnu: didjvu: Update to 0.11.0.
discard 1c0d1a1e5d gnu: Add python-py3exiv2.
discard 283fb90020 gnu: python-guardpost: Update to 1.0.4.
discard 22271efdd8 gnu: python-astroml: Fix build.
discard 4ba42a4eca gnu: python-stwcs: Remove relax-requirements phase.
discard a51cd35f7a gnu: python-cloudpathlib: Fix tests.
discard f00ad1a9fd gnu: python-algopy: Update to 0.7.2.
discard c0c9e8d6a7 gnu: python-dendropy: Update to 5.0.8.
discard 0301256686 gnu: python-django-ninja: Update to 1.5.1.
discard 3b19e9db42 gnu: python-xmp-toolkit: Update to 2.1.0.
discard 157cec4eef gnu: python-astropy-6: Skip some tests.
discard f1eb46d668 gnu: python-fastapi: Update to 0.124.0.
discard 7284aa3f4d gnu: Add python-pydantic-extra-types.
discard e625fe33af gnu: Add python-annotated-doc.
discard d6eb8eccf9 gnu: Add python-cron-converter.
discard fc322b54d8 gnu: Add python-ulid.
discard 147155b32b gnu: python-casa-formats-io: Fix tests.
discard b34060cf77 gnu: python-pydantic-settings: Update to 2.12.0.
discard 8549a6506b gnu: python-netcdf4: Update to 1.7.2.
discard 5ac2e17527 gnu: netcdf: Update to 4.9.2.
discard e5c0c762b3 gnu: python-blosc2: Update to 3.12.2.
discard 14311ca846 gnu: c-blosc2: Update to 2.22.0.
discard daafb3fae5 gnu: python-ndindex: Update to 1.10.1.
discard 96650dc35e gnu: python-numexpr: Update to 2.14.1.
discard d6d6a8f511 gnu: python-distributed: Update to 2025.11.0.
discard 660fe700f1 gnu: python-scikit-learn: Update to 1.7.2.
discard 180a69791a gnu: python-nbval: Reduce closure size.
discard 223c7438bc gnu: python-pydantic-2: Deprecate by python-pydantic.
discard 2a98301200 gnu: Add python-pydantic-1.
discard db6f8033be gnu: python-pydantic: Update to 2.12.5.
discard 337336c610 gnu: python-pydantic-core: Update to 2.41.5.
discard 22a7944d88 gnu: Add python-pytest-run-parallel.
discard 332641bece gnu: Add python-typing-inspection.
discard eeef0a3cfc gnu: python-dask: Update to 2025.11.0.
discard 285c7136d2 gnu: python-setuptools-scm-next: Undeprecate.
discard d4c5f37322 gnu: python-blosc: Adjust inputs.
discard 5b0883072c gnu: python-h5py: Update to 3.15.1.
discard 6c8509c191 gnu: python-pytest-regressions: Move to python-check.
discard 411feca8f6 gnu: python-pytest-regressions: Update to 2.8.3.
discard 50850424c1 gnu: python-scipy: Update to 1.16.3.
discard 12fc90558c gnu: python-msgpack: Update to 1.1.2.
discard 5783daa3d2 gnu: python-pandas: Update to 2.3.3.
discard 1150eef182 gnu: python-matplotlib: Update to 3.10.8.
discard d857c35b32 gnu: python-httptools: Update to 0.7.1.
discard 3eddb9f53d gnu: python-numpy-2: Deprecate by python-numpy.
discard f005c5ce5c gnu: python-numpy: Set NumPy 2 as default.
discard 40e43f39bc gnu: Add python-cython-next.
discard 9c0d699515 gnu: python-cython: Update to 3.1.7.
discard 40d8a65d4e gnu: Add python-setuptools-79.
add 25b63bc43b gnu: emacs-envrc: Update to 0.12-0.06d72d1.
new 7914a53d5d gnu: Add python-setuptools-79.
new e90b1d0784 gnu: python-cython: Update to 3.1.7.
new b7b4659022 gnu: Add python-cython-next.
new 6564d5b659 gnu: python-numpy: Set NumPy 2 as default.
new e7f8e7599d gnu: python-numpy-2: Deprecate by python-numpy.
new 7ea2fe57df gnu: python-httptools: Update to 0.7.1.
new 55099e6fca gnu: python-matplotlib: Update to 3.10.8.
new 39a071e2da gnu: python-pandas: Update to 2.3.3.
new 41c212dabb gnu: python-msgpack: Update to 1.1.2.
new 4ddc471820 gnu: python-scipy: Update to 1.16.3.
new 27eac0f223 gnu: python-pytest-regressions: Update to 2.8.3.
new 659ebb26e9 gnu: python-pytest-regressions: Move to python-check.
new 2edaf7a274 gnu: python-h5py: Update to 3.15.1.
new 62d3b03a3a gnu: python-blosc: Adjust inputs.
new 85078b6fa3 gnu: python-setuptools-scm-next: Undeprecate.
new 198d8642f0 gnu: python-dask: Update to 2025.11.0.
new 5328b9eb83 gnu: Add python-typing-inspection.
new 2f8580d4ea gnu: Add python-pytest-run-parallel.
new 8b5b25f6d7 gnu: python-pydantic-core: Update to 2.41.5.
new 8ea021c73d gnu: python-pydantic: Update to 2.12.5.
new 8914b4e6f3 gnu: Add python-pydantic-1.
new 52218eab44 gnu: python-pydantic-2: Deprecate by python-pydantic.
new a5faca2486 gnu: python-nbval: Reduce closure size.
new 9c5cfac29d gnu: python-scikit-learn: Update to 1.7.2.
new 65cb1172e6 gnu: python-distributed: Update to 2025.11.0.
new 8f38429372 gnu: python-numexpr: Update to 2.14.1.
new b7dc0c65e6 gnu: python-ndindex: Update to 1.10.1.
new f361b2f4e2 gnu: c-blosc2: Update to 2.22.0.
new 7410d5d365 gnu: python-blosc2: Update to 3.12.2.
new a63e80c1d1 gnu: netcdf: Update to 4.9.2.
new 1e3d819200 gnu: python-netcdf4: Update to 1.7.2.
new 2e462fc002 gnu: python-pydantic-settings: Update to 2.12.0.
new 19d4621927 gnu: python-casa-formats-io: Fix tests.
new 1486246a03 gnu: Add python-ulid.
new 0ef745a89d gnu: Add python-cron-converter.
new 6476b699df gnu: Add python-annotated-doc.
new 43fafc6c23 gnu: Add python-pydantic-extra-types.
new 71e4522839 gnu: python-fastapi: Update to 0.124.0.
new 046fb59623 gnu: python-astropy-6: Skip some tests.
new b10c5e9cc4 gnu: python-xmp-toolkit: Update to 2.1.0.
new c2f07e0064 gnu: python-django-ninja: Update to 1.5.1.
new ba36c8fca3 gnu: python-dendropy: Update to 5.0.8.
new a0ee545e5f gnu: python-algopy: Update to 0.7.2.
new d1d72d0d9d gnu: python-cloudpathlib: Fix tests.
new 6a82cc09c5 gnu: python-stwcs: Remove relax-requirements phase.
new 4a54ba1bfd gnu: python-astroml: Fix build.
new 4f371ed3a8 gnu: python-guardpost: Update to 1.0.4.
new b497db5cc3 gnu: Add python-py3exiv2.
new 891871dd9f gnu: didjvu: Update to 0.11.0.
new 29a990c854 gnu: python-blacksheep: Update to 2.4.5.
new 4c14d7a88f gnu: checkm: Update to 1.2.4.
new 5da5309e7e gnu: blender: Use python-numpy@1.
new 1ca6b30b62 gnu: python-cesium: Update to 0.12.4.
new 4eed26057c gnu: python-ctapipe: Update to 0.28.0.
new f0db9b6bd1 gnu: python-nox: Update to 2025.11.12.
new f36d35d6a7 gnu: python-esutil: Fix build with gcc-14.
new d2434c9f0f gnu: genetic: Use python-pynbody@2.
new bc6ace8da9 gnu: python-fgivenx: Update to 2.4.2-0.cf51dbf.
new 63402e9d2a gnu: python-gwcs: Remove relax-requirements phase.
new ae2b6aaa36 gnu: python-jwst: Remove relax-requirements phase.
new 11f0700e92 gnu: python-astrodata: Use python-numpy@1.
new eb616b8f27 gnu: python-fits-schema: Update to 0.5.6-0.ccffe04.
new 0f626e4cfc gnu: python-scikit-image: Update to 0.25.2.
new 06146a582c gnu: python-scikit-image-next: Deprecate by
python-scikit-image.
new 7959dd04d2 gnu: python-statmorph: Adjust inputs.
new 073c5ffddb gnu: python-jacobi: Fix tests.
new a9a28f5c5e gnu: python-zodipy: Remove relax-requirements phase.
new badc2ca7a9 gnu: python-kanon: Use python-numpy@1.
new d0964016cb gnu: python-linetools: Skip 2 tests.
new 4c48bca22a gnu: cpat: Update to 3.0.5.
new 4b86028403 gnu: python-annoy: Add python-h5py.
new 2bcc19fa42 gnu: python-tables: Update to 3.10.2-0.aad9079.
new 382ceac0a8 gnu: pyscenic: Update to 0.12.1-2.06bafba4.
new c2f6699b18 gnu: python-llvmlite: Update to 0.45.0.
new 8a02495771 gnu: python-numba: Update to 0.62.1.
new 0134ba9a80 gnu: catch2: Update to 2.13.10.
new ef9578d91a gnu: python-xarray: Update to 2025.12.0.
new 0c8e93db4c gnu: python-dask-image: Update to 2025.11.0.
new 577ae8a272 gnu: python-reproject: Update to 0.19.0.
new 227572890e gnu: python-spectral-cube: Update to 0.6.7.
new b30adf3bb5 gnu: python-xarray-einstats: Update to 0.9.1.
new b1d416f7f0 gnu: python-naima: Update to 0.10.3.
new 661acb0d9b gnu: python-arboreto: Update to 0.1.6-0.79f916b.
new 342296bdd9 gnu: python-arviz: Update to 0.22.0.
new a2d9a050ad gnu: python-cleanlab: Fix build.
new 8b54f010aa gnu: python-pyopengl: Skip one test.
new 4216e920c6 gnu: python-modin: Update to 0.37.1.
new d0b989410b gnu: python-jwcrypto: Adjust inputs.
new ef168050c6 gnu: websockify: Update to 0.13.0.
new da2c2f0639 gnu: veusz: Update to 4.2.
new 0debcf2e10 gnu: python-seaborn: Skip 3 tests.
new 03cd1bcd20 gnu: python-glue-astronomy: Skip 3 tests.
new 967117b38f gnu: Add python-lofar-parameterset.
new f284a77c8b gnu: python-losoto: Update to 2.6.0.
new c04e56432b gnu: python-lofar-h5plot: Use python-numpy@1.
new bd471ac448 gnu: python-meshio: Skip some tests.
new 6882d9212e gnu: python-numdifftools: Update to 0.9.42.
new ef77dd138e gnu: python-sunkit-spex: Update to 0.4.0-0.bb544c4.
new 5490aa2c81 gnu: python-kalepy: Skip 5 tests.
new d25f438716 gnu: python-regions: Update to 0.11.
new d4a8bdd6e4 gnu: python-romancal: Remove relax-requirements phase.
new ff14631564 gnu: python-hnswlib: Update to 0.8.0.
new af439735d3 gnu: python-loompy: Update to 3.0.8.
new d273a8b314 gnu: urh: Use python-numpy@1.
new b58a77128d gnu: python-ase: Update to 3.26.0.
new aa208a7315 gnu: python-asap3: Update to 3.13.10.
new 234d28dd08 gnu: python-specutils: Remove relax-requirements phase.
new aabe2bd13a gnu: python-jmespath: Switch to pyproject.
new 0f7ee9d421 gnu: python-stcal: Adjust relax-requirments phase.
new dada58b94b gnu: python-pytest-randomly: Update to 4.0.1.
new c389d5d9d4 gnu: python-pytest-randomly: Move to python-check.
new bd813c5948 gnu: python-pytest-doctestplus: Update to 1.6.0.
new 9e8f2634cb gnu: python-pythran: Clean up artifacts.
new 5f2baa8509 gnu: python-contourpy: Update to 1.3.3.
new 9b86d791f3 gnu: python-ipython: Update to 9.8.0.
new aa7ef13028 gnu: Add python-ipython-minimal.
new bbca0def1e gnu: python-jupyter-core: Move to jupyter.
new 2a6c9c8c9d gnu: python-jupyter-core: Update to 5.9.1.
new 23d5e54b8f gnu: python-jupyter-client: Simplfy bootstrapping.
new 0afc4608a5 gnu: python-jupyter-client: Move to jupyter.
new 170f428121 gnu: Remove python-jupyter-console-minimal.
new 5bcc73585c gnu: Add python-pytest-jupyter-minimal.
new e884c21b17 gnu: python-jupyter-client: Update to 8.7.0.
new 34edc3f05c gnu: python-ipykernel: Update to 7.1.0.
new eee70d7a09 gnu: python-jupyter-console: Update to 6.6.3.
new 458609b881 gnu: python-jupyter-console: Move to jupyter.
new ccedcaf1a1 gnu: Add python-jupyter-client-7.
new 75364aade8 gnu: python-notebook: Fix build.
new 5918b1bbbe gnu: python-pycollada: Update to 0.9.2.
new 804a6628f1 gnu: python-pynbody: Use python-ipython-minimal for tests.
new 0729bb7f1b gnu: crossmap: Update to 0.7.3.
new e7fbf0d44e gnu: python-awkward-cpp: Update to 47.
new 2ebce26999 gnu: python-awkward: Update to 2.8.5.
new 370daadecc gnu: python-anndata: Update to 0.12.7.
new f96d730a3c gnu: Add python-anndata-minimal.
new 6bcceae64f gnu: python-biom-format: Update to 2.1.17.
new 9d4f5c188f gnu: endgame-singularity: Update to 1.1.
new 01a6e15b68 gnu: python-scikit-bio: Update to 0.7.1.post1.
new ae050871f2 gnu: Add python-diptest.
new 730648b926 gnu: pyscenic: Add missing python-diptest.
new 367b156f3c gnu: python-pandera: Update to 0.27.1.
new 7876589a47 gnu: python-fbpca: Fix tests.
new 5c27a1b513 gnu: python-biopython: Update to 1.86.
new 2236f4cd0b gnu: python-statsmodels: Update to 0.14.5.
new 7abb7f66cd gnu: python-scanpy: Update to 1.11.5.
new ada84ecc1b gnu: python-circe: Update to 0.3.9.
new 1d90388aac gnu: python-cooler: Update to 0.10.4.
new 45e49b1473 gnu: python-coolbox: Update to 0.3.9.
new 2ba11d527c gnu: htseq: Update to 2.0.9.
new d3b91f24dc gnu: python-vaex-core: Update to 4.19.0.
new 02a38f47fe gnu: python-jupyterlab-widgets: Update to 3.0.12.
new 74cac9168d gnu: python-ipywidgets: Update to 8.1.4.
new 7d9169f6f4 gnu: Add python-array-api-strict.
new 0fde2af5bb gnu: python-plotly: Update to 5.24.1.
new 775ab72a52 gnu: python-pyudev: Update to 0.24.4.
new 4645dd0d0c gnu: python-numpoly: Update to 1.3.4.
new 9ae36ec606 gnu: python-chaospy: Update to 4.3.21.
new 4e060ac55b gnu: tangos: Update to 1.11.0.
new 091cbcca84 gnu: Remove python-eventio-1.
new 6e374503a9 gnu: Add qdldl.
new 88f4b00260 gnu: Add osqp.
new f87947f2c2 gnu: python-osqp: Update to 1.0.5.
new 3ab6ff050e gnu: Add scs.
new aaf4947a68 gnu: python-scs: Update to 3.2.10.
new ff1804a223 gnu: python-cvxpy: Update to 1.7.5.
new 27570abbc7 gnu: python-fastcluster: Update to 1.3.0.
new c8beec4bd4 gnu: Add python-lsprotocol.
new 224cb6467f gnu: Add python-pygls.
new 62e1c8fe5c gnu: python-crosshair: Update to 0.0.101.
new fef3de1edd gnu: python-metacells: Simplify.
new c1693ca7ef gnu: python-verde: Update to 1.8.1.
new 9028b86384 gnu: Add python-pyunlocbox.
new 15412d27ff gnu: python-pygsp: Update to 0.6.0.
new 06323c968a gnu: python-graphtools: Update to 2.1.0.
new a24bab40b3 gnu: python-fcsparser: Use python-numpy@1.
new 6bdeafdbc6 gnu: Add python-scprep.
new 9f302bffef gnu: python-magic-impute: Update to 3.0.0.
new 3b283018e9 gnu: python-cooltools: Update to 0.7.1.
new 6a0f7391d6 gnu: python-cnmf: Update to 1.7.0.
new dcc0c432fa gnu: idr: Fix build.
new 3c86c72c44 gnu: mageck: Use python-numpy@1.
new e12cd86d99 gnu: python-captum: Update to 0.8.0-0.4fade3a.
new f0a30d0f0c gnu: python-cellbender: Update to 0.3.2.
new 2fca0d684b gnu: macs-3: Update to 3.0.3.
new cc956152a6 gnu: python-brian2: Update to 2.10.1.
new 37b6abfd99 gnu: python-presto: Improve package, fix tests.
new 99191f7173 gnu: Add python-apricot-select.
new 1631e8f72d gnu: python-pomegranate: Update to 1.1.0.
new 89b37a8c72 gnu: python-pomegranate: Move to machine-learning.
new aa9aba9607 gnu: python-pyfaidx: Update to 0.9.0.3.
new 52312cb358 gnu: cnvkit: Update to 0.9.12-0.52f367b.
new c71a33b9fd gnu: piglit: Use python-numpy@1.
new dd437a4d68 gnu: python-tdda: Skip one more test.
new 301c8872fc gnu: python-deepdish: Use python-numpy@1.
new f47395e74d gnu: python-deeptools: Update to 3.5.6.
new 8495626a4b gnu: python-funsor: Update to 0.4.6.
new e30fb167c1 gnu: python-mygene: Switch to pyproject.
new 732cba9d88 gnu: python-drep: Update to 3.6.2-0.7b4b8fb.
new aff29c1d04 gnu: Add python-stregion.
new 3f8c44eeba gnu: python-drizzlepac: Update to 3.10.0-0.e01563c.
new d7e579c7cb gnu: python-gizmo-analysis: Remove relax-requirements phase.
new 54d0cdacf9 gnu: python-sep: Remove relax-requirements phase.
new 19be14b4e3 gnu: python-sncosmo: Adjust phases.
new c6e8cd7060 gnu: python-specreduce: Remove relax-requirements phase.
new 81eca3b776 gnu: python-utilities-awetzel: Remove relax-requirements
phase.
new b4e39acd71 gnu: python-episcanpy: Use python-numpy@1.
new a5d3f6c0b5 gnu: python-fenics-ufl-2019: Use python-numpy@1.
new 61a4b9e167 gnu: python-fenics-ffc: Use python-numpy@1.
new fd462947ce gnu: Add python-xarray-dataclass.
new d17b78bd15 gnu: python-multiscale-spatial-image: Update to 2.0.3.
new 2cbd23663e gnu: Remove python-xarray-datatree.
new 44b8f47395 gnu: python-glue-qt: Relax requirements for ipython version.
new 55949bf2d7 gnu: python-papermill: Reduce closure size; skip 2 tests.
new 93cb610ff9 gnu: python-vector: Update to 1.7.0.
new b062cab263 gnu: python-scikit-learn-1.6: Skip 3 more tests.
new cc3f4d1416 gnu: boost-numpy: Use python-numpy@1.
new 1d9e7d5986 gnu: rdkit: Use python-numpy@1.
new b3268bb3d0 gnu: python-paramz: Use python-numpy@1.
new b049abcc8d gnu: python-gpy: Use python-numpy@1.
new 4dff586083 gnu: python-paramz Move to machinve-learning.
new b59927c7b0 gnu: python-pysynphot: Update to 2.0.0-1.a5e76c3.
new 8eaf02df12 gnu: python-spisea: Use python-numpy@1.
new ccaca15cf9 gnu: python-scikit-surprise: Use python-numpy@1.
new cc949b9559 gnu: Add python-statannotations.
new e1d16488f5 gnu: Remove python-statannot.
new 5b96326367 gnu: dolphin-emu: Use python-numpy@1.
new 4425d43e61 gnu: coda: Use python-numpy@1.
new 5e579c256a gnu: python-dcor: Use python-numpy@1.
new fb487e1dd0 gnu: python-hdf5storage: Use pythno-numpy@1.
new c6b3a06b53 gnu: python-hic2cool: Fix tests.
new 01e613271f gnu: scvelo: Update to 0.3.3.
This update added new revisions after undoing existing revisions.
That is to say, some revisions that were in the old version of the
branch are not in the new version. This situation occurs
when a user --force pushes a change and generates a repository
containing something like this:
* -- * -- B -- O -- O -- O (963d91b048)
\
N -- N -- N refs/heads/python-team (01e613271f)
You should already have received notification emails for all of the O
revisions, and so the following emails describe only the N revisions
from the common base, B.
Any revisions marked "omit" are not gone; other references still
refer to them. Any revisions marked "discard" are gone forever.
The 231 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
gnu/packages/bioinformatics.scm | 62 +++++++++++++++++-----------------
gnu/packages/emacs-xyz.scm | 75 +++++++++++++++++++++--------------------
2 files changed, 71 insertions(+), 66 deletions(-)
