guix_mirror_bot pushed a change to branch python-team
in repository guix.
discard 547be09c3f gnu: python-libneuroml: Update to 0.6.7.
discard b8a6f666b0 gnu: python-imagecodecs: Fix build.
discard 88178d9729 gnu: python-quadpy: Use python-numpy@1.
discard 1a210ffdc1 gnu: python-accupy: Use python-numpy@1.
discard a2536b574a gnu: python-pyfma: Use python-numpy@1.
discard 4bc9012749 gnu: python-salib: Update to 1.5.2.
discard 10ab9a9f09 gnu: python-muon: Use python-numpy@1.
discard c6f0bc5d43 gnu: python-pyamg: Update to 5.3.0.
discard bfd7047f1b gnu: python-pygenometracks: Update to 3.9.
discard 545e20aff1 gnu: python-hicmatrix: Update to 17.2.
discard 48cce12d47 gnu: pigx-scrnaseq: Use python-numpy@1.
discard 3eda5f2a3a gnu: python-sbpy: Skip one doc test.
discard cbe86644cc gnu: scvelo: Update to 0.3.3.
discard bc7f589559 gnu: python-hic2cool: Fix tests.
discard 398b6c748a gnu: python-hdf5storage: Use pythno-numpy@1.
discard e5b114e2bc gnu: python-dcor: Use python-numpy@1.
discard 7e5a52b9ab gnu: coda: Use python-numpy@1.
discard 73f2bb969b gnu: dolphin-emu: Use python-numpy@1.
discard ba0c65ac2c gnu: Remove python-statannot.
discard 1b3c7cbf66 gnu: Add python-statannotations.
discard 885a3f5466 gnu: python-scikit-surprise: Use python-numpy@1.
discard c19a1dce66 gnu: python-spisea: Use python-numpy@1.
discard 6cf283c606 gnu: python-pysynphot: Update to 2.0.0-1.a5e76c3.
discard dab6781502 gnu: python-paramz Move to machinve-learning.
discard c7053b71ee gnu: python-gpy: Use python-numpy@1.
discard ad22941efd gnu: python-paramz: Use python-numpy@1.
discard 2ec66c114e gnu: rdkit: Use python-numpy@1.
discard 64a5811c76 gnu: boost-numpy: Use python-numpy@1.
discard b45c05bdf3 gnu: python-scikit-learn-1.6: Skip 3 more tests.
discard cbf6a03d0c gnu: python-vector: Update to 1.7.0.
discard c4bf144904 gnu: python-papermill: Reduce closure size; skip 2 tests.
discard 8d471f7cbd gnu: python-glue-qt: Relax requirements for ipython version.
discard a3eac1aec5 gnu: Remove python-xarray-datatree.
discard 702b7c2375 gnu: python-multiscale-spatial-image: Update to 2.0.3.
discard c68a5df0ec gnu: Add python-xarray-dataclass.
discard b6d3c22427 gnu: python-fenics-ffc: Use python-numpy@1.
discard 4849ce787b gnu: python-fenics-ufl-2019: Use python-numpy@1.
discard 9b3399eb3e gnu: python-episcanpy: Use python-numpy@1.
discard 4e515c3153 gnu: python-utilities-awetzel: Remove relax-requirements
phase.
discard 4dd8ce1820 gnu: python-specreduce: Remove relax-requirements phase.
discard f210d7c9b7 gnu: python-sncosmo: Adjust phases.
discard d9edf14bad gnu: python-sep: Remove relax-requirements phase.
discard c64732c41c gnu: python-gizmo-analysis: Remove relax-requirements phase.
discard 08cc87f009 gnu: python-drizzlepac: Update to 3.10.0-0.e01563c.
discard 0f36973c0b gnu: Add python-stregion.
discard 7601c021e1 gnu: python-drep: Update to 3.6.2-0.7b4b8fb.
discard c9d93fc64c gnu: python-mygene: Switch to pyproject.
discard 298e95e213 gnu: python-funsor: Update to 0.4.6.
discard 79a3d7b82b gnu: python-deeptools: Update to 3.5.6.
discard 34a3aae7ac gnu: python-deepdish: Use python-numpy@1.
discard 25273e7ae9 gnu: python-tdda: Skip one more test.
discard c4de0e9ec8 gnu: piglit: Use python-numpy@1.
discard 8d97785104 gnu: cnvkit: Update to 0.9.12-0.52f367b.
discard 0317880916 gnu: python-pyfaidx: Update to 0.9.0.3.
discard 6a8e1a8edd gnu: python-pomegranate: Move to machine-learning.
discard 41b51bbfa0 gnu: python-pomegranate: Update to 1.1.0.
discard d7c3df7063 gnu: Add python-apricot-select.
discard 109806af87 gnu: python-presto: Improve package, fix tests.
discard 23ecc91525 gnu: python-brian2: Update to 2.10.1.
discard 5a2a0b4f65 gnu: macs-3: Update to 3.0.3.
discard fbc15c2bb4 gnu: python-cellbender: Update to 0.3.2.
discard 9b454cd792 gnu: python-captum: Update to 0.8.0-0.4fade3a.
discard f57e362c10 gnu: mageck: Use python-numpy@1.
discard 5ee0c567ed gnu: idr: Fix build.
discard a167377f49 gnu: python-cnmf: Update to 1.7.0.
discard afbfb6650d gnu: python-cooltools: Update to 0.7.1.
discard bc599da873 gnu: python-magic-impute: Update to 3.0.0.
discard 9d530a617b gnu: Add python-scprep.
discard 93e47dcf4d gnu: python-fcsparser: Use python-numpy@1.
discard 04bb57730d gnu: python-graphtools: Update to 2.1.0.
discard 0d8f50dc0c gnu: python-pygsp: Update to 0.6.0.
discard e5e8ec4d11 gnu: Add python-pyunlocbox.
discard 696cec6823 gnu: python-verde: Update to 1.8.1.
discard a1dc9a9067 gnu: python-metacells: Simplify.
discard 210dd1ad5b gnu: python-crosshair: Update to 0.0.101.
discard d78eb9be54 gnu: Add python-pygls.
discard e356d4d4f6 gnu: Add python-lsprotocol.
discard 9496f29558 gnu: python-fastcluster: Update to 1.3.0.
discard fd2ac9ddd8 gnu: python-cvxpy: Update to 1.7.5.
discard a89485e92e gnu: python-scs: Update to 3.2.10.
discard 520337eb51 gnu: Add scs.
discard 1d7fa95499 gnu: python-osqp: Update to 1.0.5.
discard fb427df3d3 gnu: Add osqp.
discard 45f4f999de gnu: Add qdldl.
discard 97ca5a188d gnu: Remove python-eventio-1.
discard d24e5d1074 gnu: tangos: Update to 1.11.0.
discard 95e607468d gnu: python-chaospy: Update to 4.3.21.
discard 3f4be33029 gnu: python-numpoly: Update to 1.3.4.
discard 028d20fbd6 gnu: python-pyudev: Update to 0.24.4.
discard 568eb23042 gnu: python-plotly: Update to 5.24.1.
discard bb19ac7fee gnu: Add python-array-api-strict.
discard 950ce69808 gnu: python-ipywidgets: Update to 8.1.4.
discard 28f8b33aea gnu: python-jupyterlab-widgets: Update to 3.0.12.
discard bbaefb9860 gnu: python-vaex-core: Update to 4.19.0.
discard f9f5a6d1b9 gnu: htseq: Update to 2.0.9.
discard 808ddad7cd gnu: python-coolbox: Update to 0.3.9.
discard bb698a70ca gnu: python-cooler: Update to 0.10.4.
discard 08b05c0e7c gnu: python-circe: Update to 0.3.9.
discard c442047a0e gnu: python-scanpy: Update to 1.11.5.
discard 83ee87b10f gnu: python-statsmodels: Update to 0.14.5.
discard 714bd30b6c gnu: python-biopython: Update to 1.86.
discard dc855708b8 gnu: python-fbpca: Fix tests.
discard 6a3d60751f gnu: python-pandera: Update to 0.27.1.
discard 7512f3c347 gnu: pyscenic: Add missing python-diptest.
discard 58f5b945d4 gnu: Add python-diptest.
discard 2f30bd1160 gnu: python-scikit-bio: Update to 0.7.1.post1.
discard 45b0640c4d gnu: endgame-singularity: Update to 1.1.
discard 2d1ab47249 gnu: python-biom-format: Update to 2.1.17.
discard 1b4f38b6ed gnu: Add python-anndata-minimal.
discard fcf2275b5e gnu: python-anndata: Update to 0.12.7.
discard e67e39f087 gnu: python-awkward: Update to 2.8.5.
discard 9c705118dc gnu: python-awkward-cpp: Update to 47.
discard b42e75f679 gnu: crossmap: Update to 0.7.3.
discard 21af078be6 gnu: python-pynbody: Use python-ipython-minimal for tests.
discard 291574ef1f gnu: python-pycollada: Update to 0.9.2.
discard e6fe63a8ca gnu: python-notebook: Fix build.
discard 8d5fd139ae gnu: Add python-jupyter-client-7.
discard 4073b7dd53 gnu: python-jupyter-console: Move to jupyter.
discard c8035aa416 gnu: python-jupyter-console: Update to 6.6.3.
discard 8f3109c6c7 gnu: python-ipykernel: Update to 7.1.0.
discard 5a6f2fcd92 gnu: python-jupyter-client: Update to 8.7.0.
discard bdb9e210f5 gnu: Add python-pytest-jupyter-minimal.
discard b61a1e8935 gnu: Remove python-jupyter-console-minimal.
discard e530b1cec3 gnu: python-jupyter-client: Move to jupyter.
discard ca65d116b6 gnu: python-jupyter-client: Simplfy bootstrapping.
discard a5f6195ed3 gnu: python-jupyter-core: Update to 5.9.1.
discard 7b0d78a955 gnu: python-jupyter-core: Move to jupyter.
discard a8e1c90892 gnu: Add python-ipython-minimal.
discard 71fecc7332 gnu: python-ipython: Update to 9.8.0.
discard 00ae3d2358 gnu: python-contourpy: Update to 1.3.3.
discard 8c760a12b3 gnu: python-pythran: Clean up artifacts.
discard 5182df8f8f gnu: python-pytest-doctestplus: Update to 1.6.0.
discard 57db049e24 gnu: python-pytest-randomly: Move to python-check.
discard 415c780ded gnu: python-pytest-randomly: Update to 4.0.1.
discard 421dbfab8a gnu: python-stcal: Adjust relax-requirments phase.
discard c1b49ef61f gnu: python-jmespath: Switch to pyproject.
discard 55dc5912d0 gnu: python-specutils: Remove relax-requirements phase.
discard b3b418367a gnu: python-asap3: Update to 3.13.10.
discard b17a093b8b gnu: python-ase: Update to 3.26.0.
discard 1b16f4797a gnu: urh: Use python-numpy@1.
discard b46277e1f6 gnu: python-loompy: Update to 3.0.8.
discard 28dd0d26d4 gnu: python-hnswlib: Update to 0.8.0.
discard 17e5334a92 gnu: python-romancal: Remove relax-requirements phase.
discard 09927bcd83 gnu: python-regions: Update to 0.11.
discard 716b5012cc gnu: python-kalepy: Skip 5 tests.
discard 7f21762c89 gnu: python-sunkit-spex: Update to 0.4.0-0.bb544c4.
discard fdc6340356 gnu: python-numdifftools: Update to 0.9.42.
discard dd966491a4 gnu: python-meshio: Skip some tests.
discard 2e8d82fd24 gnu: python-lofar-h5plot: Use python-numpy@1.
discard 734db6bd71 gnu: python-losoto: Update to 2.6.0.
discard b6f997c8bb gnu: Add python-lofar-parameterset.
discard 9dc07ea88f gnu: python-glue-astronomy: Skip 3 tests.
discard ff47d1ff36 gnu: python-seaborn: Skip 3 tests.
discard e3cc24fd9a gnu: veusz: Update to 4.2.
discard d26b685d07 gnu: websockify: Update to 0.13.0.
discard b653aba4c1 gnu: python-jwcrypto: Adjust inputs.
discard b60bbef85a gnu: python-modin: Update to 0.37.1.
discard 7f3e5ff30b gnu: python-pyopengl: Skip one test.
discard 8962817e5f gnu: python-cleanlab: Fix build.
discard b9d4eff846 gnu: python-arviz: Update to 0.22.0.
discard 40e17385d0 gnu: python-arboreto: Update to 0.1.6-0.79f916b.
discard dcd1ba61dd gnu: python-naima: Update to 0.10.3.
discard bfc8881d58 gnu: python-xarray-einstats: Update to 0.9.1.
discard 9927e2a6d4 gnu: python-spectral-cube: Update to 0.6.7.
discard 69414447d6 gnu: python-reproject: Update to 0.19.0.
discard 957890c4e8 gnu: python-dask-image: Update to 2025.11.0.
discard d74edf5216 gnu: python-xarray: Update to 2025.12.0.
discard b23179486c gnu: catch2: Update to 2.13.10.
discard 9756b4d237 gnu: python-numba: Update to 0.62.1.
discard 191e334b30 gnu: python-llvmlite: Update to 0.45.0.
discard 76b8b2fc42 gnu: pyscenic: Update to 0.12.1-2.06bafba4.
discard dc26869147 gnu: python-tables: Update to 3.10.2-0.aad9079.
discard 5c851ef4bf gnu: python-annoy: Add python-h5py.
discard c6a4029cbb gnu: cpat: Update to 3.0.5.
discard 0768028d5b gnu: python-linetools: Skip 2 tests.
discard 9bb42d3dee gnu: python-kanon: Use python-numpy@1.
discard aa87f5ccb5 gnu: python-zodipy: Remove relax-requirements phase.
discard 3dd9e4743a gnu: python-jacobi: Fix tests.
discard 27bf207be5 gnu: python-statmorph: Adjust inputs.
discard 00ce7fade1 gnu: python-scikit-image-next: Deprecate by
python-scikit-image.
discard 496afc9bc2 gnu: python-scikit-image: Update to 0.25.2.
discard 3e926061ea gnu: python-fits-schema: Update to 0.5.6-0.ccffe04.
discard 2ca2328b24 gnu: python-astrodata: Use python-numpy@1.
discard c82d977a94 gnu: python-jwst: Remove relax-requirements phase.
discard f104d5ca4a gnu: python-gwcs: Remove relax-requirements phase.
discard 2f4a7b7d45 gnu: python-fgivenx: Update to 2.4.2-0.cf51dbf.
discard 6e148cd300 gnu: genetic: Use python-pynbody@2.
discard 3666b7cc65 gnu: python-esutil: Fix build with gcc-14.
discard 00baa08824 gnu: python-nox: Update to 2025.11.12.
discard 47b5bd0ce3 gnu: python-ctapipe: Update to 0.28.0.
discard 96d008b917 gnu: python-cesium: Update to 0.12.4.
discard 24d76a3218 gnu: blender: Use python-numpy@1.
discard 454f349228 gnu: checkm: Update to 1.2.4.
discard af74706759 gnu: python-blacksheep: Update to 2.4.5.
discard a70359d7e9 gnu: didjvu: Update to 0.11.0.
discard db97458048 gnu: Add python-py3exiv2.
discard 174bed476c gnu: python-guardpost: Update to 1.0.4.
discard ac240c6b1c gnu: python-astroml: Fix build.
discard 824c6f009f gnu: python-stwcs: Remove relax-requirements phase.
discard c6ab7f0afd gnu: python-cloudpathlib: Fix tests.
discard d9d46f0a77 gnu: python-algopy: Update to 0.7.2.
discard 12016023cd gnu: python-dendropy: Update to 5.0.8.
discard 22485fb6ce gnu: python-django-ninja: Update to 1.5.1.
discard 2f497867ab gnu: python-xmp-toolkit: Update to 2.1.0.
discard f4b9c498f5 gnu: python-astropy-6: Skip some tests.
discard 250603916e gnu: python-fastapi: Update to 0.124.0.
discard 1144e1b12f gnu: Add python-pydantic-extra-types.
discard d40e8496cd gnu: Add python-annotated-doc.
discard 2d7bac5a7c gnu: Add python-cron-converter.
discard 99017d5a1c gnu: Add python-ulid.
discard 1158435fe1 gnu: python-casa-formats-io: Fix tests.
discard 7de46c6b2e gnu: python-pydantic-settings: Update to 2.12.0.
discard c00dfbba13 gnu: python-netcdf4: Update to 1.7.2.
discard a238282b86 gnu: netcdf: Update to 4.9.2.
discard 795eb90c8c gnu: python-blosc2: Update to 3.12.2.
discard 7344614bba gnu: c-blosc2: Update to 2.22.0.
discard 2d8ad0e5b8 gnu: python-ndindex: Update to 1.10.1.
discard 2542a07ed6 gnu: python-numexpr: Update to 2.14.1.
discard 6f6cbe3f74 gnu: python-distributed: Update to 2025.11.0.
discard e1ea8f92f7 gnu: python-scikit-learn: Update to 1.7.2.
discard f756465c0c gnu: python-nbval: Reduce closure size.
discard e1951432c4 gnu: python-pydantic-2: Deprecate by python-pydantic.
discard 81bad40309 gnu: Add python-pydantic-1.
discard f61ea74704 gnu: python-pydantic: Update to 2.12.5.
discard c5b87cf68d gnu: python-pydantic-core: Update to 2.41.5.
discard a83f2e2e0a gnu: Add python-pytest-run-parallel.
discard 3f3d117ce6 gnu: Add python-typing-inspection.
discard 164da8531d gnu: python-dask: Update to 2025.11.0.
discard a58ce615e4 gnu: python-setuptools-scm-next: Undeprecate.
discard 8b90540ae4 gnu: python-blosc: Adjust inputs.
discard a22380e06f gnu: python-h5py: Update to 3.15.1.
discard 3064002586 gnu: python-pytest-regressions: Move to python-check.
discard dab8acf881 gnu: python-pytest-regressions: Update to 2.8.3.
discard 552bb56b95 gnu: python-scipy: Update to 1.16.3.
discard 3b525e6d45 gnu: python-msgpack: Update to 1.1.2.
discard fda0c02745 gnu: python-pandas: Update to 2.3.3.
discard eb4a88b101 gnu: python-matplotlib: Update to 3.10.8.
discard 7a66375a81 gnu: python-httptools: Update to 0.7.1.
discard b6332052d8 gnu: python-numpy-2: Deprecate by python-numpy.
discard 4300a2eefc gnu: python-numpy: Set NumPy 2 as default.
discard 1e2b626b73 gnu: Add python-cython-next.
discard 2e14137fea gnu: python-cython: Update to 3.1.7.
discard bcea99116e gnu: Add python-setuptools-79.
add af7d018520 gnu: python-liblarch: Update to 3.2.0-0.fe06860.
add 8f940ef48d gnu: yt-dlp: Update to 2025.12.08.
add 35fee4fd2e build-system: cargo: Use the correct guile-json when
cross-compiling.
add c2b1128c7c gnu: emacs-org-node: Deprecate version 2.
add 8c34dfeec2 doc: Improve building from git instructions.
add f3a64d940b doc: Explain that some test require network when building
from git.
add 450e3f01f7 doc: Better explain extra development tools when building
from git.
add b670a1ed28 gnu: Add emacs-markov-text.
add eb48c7db26 gnu: Remove emacs-idris-mode.
add 1e9581caa3 gnu: Remove idris-wl-pprint.
add c0d1c2760d gnu: Remove idris-bifunctors.
add cee82b7fbf gnu: Remove idris-lens.
add f9e92222d9 gnu: Remove idris-lightyear.
add e89d3a0857 gnu: Remove idris.
add 6bd2a77b7b gnu: Remove (gnu packages idris).
add 61bba2ef6e gnu: Remove openshot.
add 18970fe4e3 gnu: Remove anki.
add 70498a4ade gnu: python-pyqtwebengine-6: Disinherit from
python-pyqtwebengine.
add 843719a57a gnu: Remove python-pyqtwebengine.
add d190f22813 gnu: Remove khmer.
add c3190a925c gnu: Remove florence.
add 03127eb11a gnu: Remove tuxmath.
add e09db4c8f3 gnu: Remove t4k-common.
add 191e59bc1c gnu: Remove easytag.
add d12619fa3b gnu: Remove akonadi-notes.
add e9d632640b gnu: Remove guile-fibers-1.0.
add 301255c5f8 gnu: Remove usage of (gnu packages idris).
add 497b81350a gnu: emacs-restclient: Update to 1.0-0.1800a4e.
add ae77366df7 gnu: Add emacs-org-supertag.
add c2ca6b7947 gnu: php: Update to 8.3.29.
new edcd200101 gnu: Add python-setuptools-79.
new 409da9ac1c gnu: python-cython: Update to 3.1.7.
new 45e523033e gnu: Add python-cython-next.
new 066eedca1a gnu: python-numpy: Set NumPy 2 as default.
new 43ab8e3700 gnu: python-numpy-2: Deprecate by python-numpy.
new 52bb30bf48 gnu: python-httptools: Update to 0.7.1.
new ef28c1ba56 gnu: python-matplotlib: Update to 3.10.8.
new 4014a5f84f gnu: python-pandas: Update to 2.3.3.
new 67c5e79910 gnu: python-msgpack: Update to 1.1.2.
new 38bb981b0b gnu: python-scipy: Update to 1.16.3.
new e6193b5699 gnu: python-pytest-regressions: Update to 2.8.3.
new fb3964a7e8 gnu: python-pytest-regressions: Move to python-check.
new 6227d97a1d gnu: python-h5py: Update to 3.15.1.
new abf8d38228 gnu: python-blosc: Adjust inputs.
new 16049d8652 gnu: python-setuptools-scm-next: Undeprecate.
new c4985c5011 gnu: python-dask: Update to 2025.11.0.
new 2d2f75c9a8 gnu: Add python-typing-inspection.
new d02aaf02b1 gnu: Add python-pytest-run-parallel.
new 7df543e845 gnu: python-pydantic-core: Update to 2.41.5.
new c156494c8b gnu: python-pydantic: Update to 2.12.5.
new 485dbea9f7 gnu: Add python-pydantic-1.
new e82bd68fb0 gnu: python-pydantic-2: Deprecate by python-pydantic.
new b8876f8b9e gnu: python-nbval: Reduce closure size.
new f553937e65 gnu: python-scikit-learn: Update to 1.7.2.
new 4568a17fed gnu: python-distributed: Update to 2025.11.0.
new a9cbf4bf28 gnu: python-numexpr: Update to 2.14.1.
new 5b1448db8d gnu: python-ndindex: Update to 1.10.1.
new 61165eb68a gnu: c-blosc2: Update to 2.22.0.
new 9c3ef1736e gnu: python-blosc2: Update to 3.12.2.
new 3225c2e712 gnu: netcdf: Update to 4.9.2.
new 0503034fe1 gnu: python-netcdf4: Update to 1.7.2.
new 97b7aa628e gnu: python-pydantic-settings: Update to 2.12.0.
new e2cf2804b9 gnu: python-casa-formats-io: Fix tests.
new af3813a707 gnu: Add python-ulid.
new b99b42aac2 gnu: Add python-cron-converter.
new aef766f7d0 gnu: Add python-annotated-doc.
new 429cbaee53 gnu: Add python-pydantic-extra-types.
new 14274475a9 gnu: python-fastapi: Update to 0.124.0.
new 4ddaeb3edc gnu: python-astropy-6: Skip some tests.
new 659a665d57 gnu: python-xmp-toolkit: Update to 2.1.0.
new 6286258b58 gnu: python-django-ninja: Update to 1.5.1.
new 06e7b67e06 gnu: python-dendropy: Update to 5.0.8.
new 721c9697bc gnu: python-algopy: Update to 0.7.2.
new 9db8e9c931 gnu: python-cloudpathlib: Fix tests.
new 40baa94d09 gnu: python-stwcs: Remove relax-requirements phase.
new f957cad61c gnu: python-astroml: Fix build.
new 20d9941672 gnu: python-guardpost: Update to 1.0.4.
new 027dd7a44f gnu: Add python-py3exiv2.
new 2a2a266c6c gnu: didjvu: Update to 0.11.0.
new 6b2ccf70ed gnu: python-blacksheep: Update to 2.4.5.
new c2cd7f8a2e gnu: checkm: Update to 1.2.4.
new 883da89ffa gnu: blender: Use python-numpy@1.
new 9649d60d1c gnu: python-cesium: Update to 0.12.4.
new f475072f75 gnu: python-ctapipe: Update to 0.28.0.
new 5aaabc0b80 gnu: python-nox: Update to 2025.11.12.
new 7ab813c4ca gnu: python-esutil: Fix build with gcc-14.
new 122d1014d2 gnu: genetic: Use python-pynbody@2.
new 41e34e7068 gnu: python-fgivenx: Update to 2.4.2-0.cf51dbf.
new 8d6abc3a78 gnu: python-gwcs: Remove relax-requirements phase.
new 7223cb638d gnu: python-jwst: Remove relax-requirements phase.
new 8fc1395ba7 gnu: python-astrodata: Use python-numpy@1.
new d11cc71c15 gnu: python-fits-schema: Update to 0.5.6-0.ccffe04.
new 4cd13ddcc6 gnu: python-scikit-image: Update to 0.25.2.
new a7038f268d gnu: python-scikit-image-next: Deprecate by
python-scikit-image.
new d5c6439fff gnu: python-statmorph: Adjust inputs.
new 76b5e19e68 gnu: python-jacobi: Fix tests.
new c91faa8192 gnu: python-zodipy: Remove relax-requirements phase.
new 718ab348fd gnu: python-kanon: Use python-numpy@1.
new 444d5fa52f gnu: python-linetools: Skip 2 tests.
new 3c3e0b73f3 gnu: cpat: Update to 3.0.5.
new 30a884eda3 gnu: python-annoy: Add python-h5py.
new 5ad03924c2 gnu: python-tables: Update to 3.10.2-0.aad9079.
new 09c6c1d77c gnu: pyscenic: Update to 0.12.1-2.06bafba4.
new 2a6652f34a gnu: python-llvmlite: Update to 0.45.0.
new a69c0a2619 gnu: python-numba: Update to 0.62.1.
new dc435bac4e gnu: catch2: Update to 2.13.10.
new 0312d56be6 gnu: python-xarray: Update to 2025.12.0.
new 8eef7ade52 gnu: python-dask-image: Update to 2025.11.0.
new bd42fbd885 gnu: python-reproject: Update to 0.19.0.
new 138fa2f9ca gnu: python-spectral-cube: Update to 0.6.7.
new 79d94f559b gnu: python-xarray-einstats: Update to 0.9.1.
new cb3aa698a6 gnu: python-naima: Update to 0.10.3.
new 0bc68bbd63 gnu: python-arboreto: Update to 0.1.6-0.79f916b.
new 5821705bba gnu: python-arviz: Update to 0.22.0.
new 7cc79a6895 gnu: python-cleanlab: Fix build.
new 5e259c02fa gnu: python-pyopengl: Skip one test.
new ef5409ecd0 gnu: python-modin: Update to 0.37.1.
new 71c0225788 gnu: python-jwcrypto: Adjust inputs.
new d89faa886d gnu: websockify: Update to 0.13.0.
new b3b0930baa gnu: veusz: Update to 4.2.
new 9d7d7901ae gnu: python-seaborn: Skip 3 tests.
new 6085e8775c gnu: python-glue-astronomy: Skip 3 tests.
new 15904dfa90 gnu: Add python-lofar-parameterset.
new e24fa271c3 gnu: python-losoto: Update to 2.6.0.
new 9f9b13d796 gnu: python-lofar-h5plot: Use python-numpy@1.
new 5521d46679 gnu: python-meshio: Skip some tests.
new d45a89300e gnu: python-numdifftools: Update to 0.9.42.
new 764d6b0a0b gnu: python-sunkit-spex: Update to 0.4.0-0.bb544c4.
new 643ec504d6 gnu: python-kalepy: Skip 5 tests.
new aec34ea978 gnu: python-regions: Update to 0.11.
new ad286ae43c gnu: python-romancal: Remove relax-requirements phase.
new 4f9b59a226 gnu: python-hnswlib: Update to 0.8.0.
new 22d454cbef gnu: python-loompy: Update to 3.0.8.
new bc1de12a7f gnu: urh: Use python-numpy@1.
new de5f4375cd gnu: python-ase: Update to 3.26.0.
new 323f27c388 gnu: python-asap3: Update to 3.13.10.
new ae5a8b9251 gnu: python-specutils: Remove relax-requirements phase.
new 651bef7c89 gnu: python-jmespath: Switch to pyproject.
new 22445a6ea2 gnu: python-stcal: Adjust relax-requirments phase.
new 843ae0023b gnu: python-pytest-randomly: Update to 4.0.1.
new d5cd436ec0 gnu: python-pytest-randomly: Move to python-check.
new 020ad46f2b gnu: python-pytest-doctestplus: Update to 1.6.0.
new 073edb5e73 gnu: python-pythran: Clean up artifacts.
new 832b655b03 gnu: python-contourpy: Update to 1.3.3.
new 06e8d3fad9 gnu: python-ipython: Update to 9.8.0.
new b0e95d8fb8 gnu: Add python-ipython-minimal.
new bd7c1ea8a0 gnu: python-jupyter-core: Move to jupyter.
new e61dca610b gnu: python-jupyter-core: Update to 5.9.1.
new c813b6b197 gnu: python-jupyter-client: Simplfy bootstrapping.
new b20157a9e4 gnu: python-jupyter-client: Move to jupyter.
new f6d25e5d70 gnu: Remove python-jupyter-console-minimal.
new 1763055a53 gnu: Add python-pytest-jupyter-minimal.
new 91dd1885a1 gnu: python-jupyter-client: Update to 8.7.0.
new e9ca452040 gnu: python-ipykernel: Update to 7.1.0.
new 90a0f70f86 gnu: python-jupyter-console: Update to 6.6.3.
new 872ff8ebd3 gnu: python-jupyter-console: Move to jupyter.
new 40f8f90f87 gnu: Add python-jupyter-client-7.
new 235a934ae8 gnu: python-notebook: Fix build.
new 83773f1a6d gnu: python-pycollada: Update to 0.9.2.
new 943c26c236 gnu: python-pynbody: Use python-ipython-minimal for tests.
new f3c6885f3c gnu: crossmap: Update to 0.7.3.
new 8f87f62957 gnu: python-awkward-cpp: Update to 47.
new 2d329359c6 gnu: python-awkward: Update to 2.8.5.
new 5126989192 gnu: python-anndata: Update to 0.12.7.
new feae56de97 gnu: Add python-anndata-minimal.
new b64fa91a82 gnu: python-biom-format: Update to 2.1.17.
new b447522d0d gnu: endgame-singularity: Update to 1.1.
new ae4c4e8e1d gnu: python-scikit-bio: Update to 0.7.1.post1.
new d804c9c028 gnu: Add python-diptest.
new 4459f1140a gnu: pyscenic: Add missing python-diptest.
new 1dddce57d7 gnu: python-pandera: Update to 0.27.1.
new 198016f662 gnu: python-fbpca: Fix tests.
new dcfb5648b4 gnu: python-biopython: Update to 1.86.
new f6530116e2 gnu: python-statsmodels: Update to 0.14.5.
new 79850aec97 gnu: python-scanpy: Update to 1.11.5.
new b2446bf15e gnu: python-circe: Update to 0.3.9.
new 04ce45b687 gnu: python-cooler: Update to 0.10.4.
new 90ab86857e gnu: python-coolbox: Update to 0.3.9.
new dc2f536df6 gnu: htseq: Update to 2.0.9.
new b7bcf56328 gnu: python-vaex-core: Update to 4.19.0.
new 34cec20b82 gnu: python-jupyterlab-widgets: Update to 3.0.12.
new 08c12e5cd8 gnu: python-ipywidgets: Update to 8.1.4.
new d12e16ef0b gnu: Add python-array-api-strict.
new 78995bdeeb gnu: python-plotly: Update to 5.24.1.
new a887242426 gnu: python-pyudev: Update to 0.24.4.
new 68553ed6f1 gnu: python-numpoly: Update to 1.3.4.
new 5624289534 gnu: python-chaospy: Update to 4.3.21.
new db2413f8c3 gnu: tangos: Update to 1.11.0.
new 6b2a1d9b8c gnu: Remove python-eventio-1.
new 7622f179be gnu: Add qdldl.
new 0a4c4470a0 gnu: Add osqp.
new 54fc29e81f gnu: python-osqp: Update to 1.0.5.
new 6ad22eedf2 gnu: Add scs.
new 0d69707337 gnu: python-scs: Update to 3.2.10.
new 82bbb3e4a4 gnu: python-cvxpy: Update to 1.7.5.
new f20414b352 gnu: python-fastcluster: Update to 1.3.0.
new ae64dae86b gnu: Add python-lsprotocol.
new 0cf5b638a6 gnu: Add python-pygls.
new c0efabcdaa gnu: python-crosshair: Update to 0.0.101.
new fb1ebdb7fc gnu: python-metacells: Simplify.
new 24892620fc gnu: python-verde: Update to 1.8.1.
new 3922891c76 gnu: Add python-pyunlocbox.
new 59c1cff42b gnu: python-pygsp: Update to 0.6.0.
new 65a707d32e gnu: python-graphtools: Update to 2.1.0.
new 42a4d0ae01 gnu: python-fcsparser: Use python-numpy@1.
new 60129c98b3 gnu: Add python-scprep.
new 02a0c7691a gnu: python-magic-impute: Update to 3.0.0.
new b660ae6bc2 gnu: python-cooltools: Update to 0.7.1.
new f506e23de2 gnu: python-cnmf: Update to 1.7.0.
new a56cd7b3ad gnu: idr: Fix build.
new 21fc6c5aa0 gnu: mageck: Use python-numpy@1.
new ad94007570 gnu: python-captum: Update to 0.8.0-0.4fade3a.
new a4fa9ed513 gnu: python-cellbender: Update to 0.3.2.
new b302b657dc gnu: macs-3: Update to 3.0.3.
new b669ec6797 gnu: python-brian2: Update to 2.10.1.
new 1c32ea6aca gnu: python-presto: Improve package, fix tests.
new 12c55bda02 gnu: Add python-apricot-select.
new d007c3098b gnu: python-pomegranate: Update to 1.1.0.
new 8aae422d9e gnu: python-pomegranate: Move to machine-learning.
new aaea3e3b1d gnu: python-pyfaidx: Update to 0.9.0.3.
new 8b59fe2352 gnu: cnvkit: Update to 0.9.12-0.52f367b.
new 67d5158a21 gnu: piglit: Use python-numpy@1.
new 14e33b1345 gnu: python-tdda: Skip one more test.
new 2b63190b60 gnu: python-deepdish: Use python-numpy@1.
new bea0d96e71 gnu: python-deeptools: Update to 3.5.6.
new 1a0bde1399 gnu: python-funsor: Update to 0.4.6.
new deb1318f59 gnu: python-mygene: Switch to pyproject.
new 188c7f0e7b gnu: python-drep: Update to 3.6.2-0.7b4b8fb.
new 69278e995d gnu: Add python-stregion.
new 20d5b199f9 gnu: python-drizzlepac: Update to 3.10.0-0.e01563c.
new d76b1b3a3b gnu: python-gizmo-analysis: Remove relax-requirements phase.
new 3bee99fccd gnu: python-sep: Remove relax-requirements phase.
new ec9fcaf80c gnu: python-sncosmo: Adjust phases.
new a2394673e3 gnu: python-specreduce: Remove relax-requirements phase.
new 6af410e3b5 gnu: python-utilities-awetzel: Remove relax-requirements
phase.
new 650fa1497f gnu: python-episcanpy: Use python-numpy@1.
new 0eec8d1680 gnu: python-fenics-ufl-2019: Use python-numpy@1.
new da4c0a8ac5 gnu: python-fenics-ffc: Use python-numpy@1.
new ba30c628d9 gnu: Add python-xarray-dataclass.
new 1dbd53f999 gnu: python-multiscale-spatial-image: Update to 2.0.3.
new 2428d97261 gnu: Remove python-xarray-datatree.
new 03f260bb9c gnu: python-glue-qt: Relax requirements for ipython version.
new 49d3848824 gnu: python-papermill: Reduce closure size; skip 2 tests.
new 9c13467f61 gnu: python-vector: Update to 1.7.0.
new 320106375d gnu: python-scikit-learn-1.6: Skip 3 more tests.
new 4cec8d4598 gnu: boost-numpy: Use python-numpy@1.
new b9d8b36a43 gnu: rdkit: Use python-numpy@1.
new 86b5536d77 gnu: python-paramz: Use python-numpy@1.
new 5759aef3e0 gnu: python-gpy: Use python-numpy@1.
new 25fbf70033 gnu: python-paramz Move to machinve-learning.
new 296a2aa15a gnu: python-pysynphot: Update to 2.0.0-1.a5e76c3.
new ffc61f7e0b gnu: python-spisea: Use python-numpy@1.
new 197c7eb03f gnu: python-scikit-surprise: Use python-numpy@1.
new aeb21a3cf3 gnu: Add python-statannotations.
new ddfc5a98e4 gnu: Remove python-statannot.
new 66e2d4ad5f gnu: dolphin-emu: Use python-numpy@1.
new bd9b3acca2 gnu: coda: Use python-numpy@1.
new fe6f0fb18a gnu: python-dcor: Use python-numpy@1.
new ff1bc9b805 gnu: python-hdf5storage: Use pythno-numpy@1.
new 88b3e6015b gnu: python-hic2cool: Fix tests.
new 0a5754d8ec gnu: scvelo: Update to 0.3.3.
new 8cc4e302dc gnu: python-sbpy: Skip one doc test.
new 71775b35e1 gnu: pigx-scrnaseq: Use python-numpy@1.
new 1a9c41cd9c gnu: python-hicmatrix: Update to 17.2.
new f47fdfa161 gnu: python-pygenometracks: Update to 3.9.
new 2791756594 gnu: python-pyamg: Update to 5.3.0.
new a5ed6897d4 gnu: python-muon: Use python-numpy@1.
new aeae963069 gnu: python-salib: Update to 1.5.2.
new d3243d3b41 gnu: python-pyfma: Use python-numpy@1.
new 472bd8c7c6 gnu: python-accupy: Use python-numpy@1.
new 3c1a950b07 gnu: python-quadpy: Use python-numpy@1.
new e17699841e gnu: python-imagecodecs: Fix build.
new d763042d7a gnu: python-libneuroml: Update to 0.6.7.
new e12c2ddad0 gnu: python-watchfiles: Update to 1.1.1.
new 348bf49ea2 gnu: Remove python-watchgod.
This update added new revisions after undoing existing revisions.
That is to say, some revisions that were in the old version of the
branch are not in the new version. This situation occurs
when a user --force pushes a change and generates a repository
containing something like this:
* -- * -- B -- O -- O -- O (547be09c3f)
\
N -- N -- N refs/heads/python-team (348bf49ea2)
You should already have received notification emails for all of the O
revisions, and so the following emails describe only the N revisions
from the common base, B.
Any revisions marked "omit" are not gone; other references still
refer to them. Any revisions marked "discard" are gone forever.
The 245 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
doc/contributing.texi | 12 +-
gnu/local.mk | 4 -
gnu/packages/accessibility.scm | 44 --
gnu/packages/bioinformatics.scm | 80 ---
gnu/packages/education.scm | 225 -------
gnu/packages/emacs-xyz.scm | 171 ++---
gnu/packages/gnome.scm | 37 +-
gnu/packages/guile-xyz.scm | 53 --
gnu/packages/idris.scm | 283 --------
gnu/packages/kde-pim.scm | 26 -
gnu/packages/music.scm | 75 ---
gnu/packages/patches/anki-mpv-args.patch | 42 --
.../guile-fibers-destroy-peer-schedulers.patch | 24 -
gnu/packages/patches/idris-test-ffi008.patch | 26 -
gnu/packages/php.scm | 4 +-
gnu/packages/python-xyz.scm | 18 +-
gnu/packages/qt.scm | 65 +-
gnu/packages/rust-crates.scm | 750 +++++++++++----------
gnu/packages/video.scm | 67 +-
guix/build-system/cargo.scm | 2 +-
po/packages/POTFILES.in | 1 -
21 files changed, 506 insertions(+), 1503 deletions(-)
delete mode 100644 gnu/packages/idris.scm
delete mode 100644 gnu/packages/patches/anki-mpv-args.patch
delete mode 100644
gnu/packages/patches/guile-fibers-destroy-peer-schedulers.patch
delete mode 100644 gnu/packages/patches/idris-test-ffi008.patch
