guix_mirror_bot pushed a change to branch r-team
in repository guix.
discard 2a795c6971 import/cran: Use sets instead of lset-union.
discard 8956b9a799 gnu: r-cytoml: Update list of ignored native inputs.
discard a43f903037 import/cran: Fix import of packages in single quotes.
discard 8ab68b25af gnu: r-tsne: Move to (gnu packages cran).
discard 781df2b3d9 gnu: r-trimcluster: Move to (gnu packages cran).
discard 80089c6fc7 gnu: r-tmvnsim: Move to (gnu packages cran).
discard 0f2ef779e6 gnu: r-tidyselect: Move to (gnu packages cran).
discard 62dfb8e966 gnu: r-tidyr: Move to (gnu packages cran).
discard ef686a0ab4 gnu: r-tibble: Move to (gnu packages cran).
discard 2aea556266 gnu: r-testthat: Move to (gnu packages cran).
discard 5b8b084d61 gnu: r-tclust: Move to (gnu packages cran).
discard d895247529 gnu: r-synchronicity: Move to (gnu packages cran).
discard 7708e0b336 gnu: r-statmod: Move to (gnu packages cran).
discard 8163b82d97 gnu: r-sparsem: Move to (gnu packages cran).
discard fc4cd6168d gnu: r-sourcetools: Move to (gnu packages cran).
discard d1378d627a gnu: r-snow: Move to (gnu packages cran).
discard 5b50538e2e gnu: r-sn: Move to (gnu packages cran).
discard 23e20e81f9 gnu: r-simr: Move to (gnu packages cran).
discard 148b0f2eb0 gnu: r-sfsmisc: Move to (gnu packages cran).
discard 6e934ff3ca gnu: r-segmented: Move to (gnu packages cran).
discard abce454a15 gnu: r-vpc: Move to (gnu packages cran).
discard d1fe5ceb2d gnu: r-rversions: Move to (gnu packages cran).
discard da15e06d72 gnu: r-runit: Move to (gnu packages cran).
discard 9655968a8c gnu: r-rtsne: Move to (gnu packages cran).
discard 1bcbcf5916 gnu: r-rstudioapi: Move to (gnu packages cran).
discard d9b9f3a8b2 gnu: r-rsqlite: Move to (gnu packages cran).
discard 1dde29dee8 gnu: r-rrcov: Move to (gnu packages cran).
discard e9eda8552e gnu: r-rprojroot: Move to (gnu packages cran).
discard 30dd077c8a gnu: r-roxygen2: Move to (gnu packages cran).
discard 6577348cd6 gnu: r-rocr: Move to (gnu packages cran).
discard a17cd9f844 gnu: r-robustbase: Move to (gnu packages cran).
discard be9c69f294 gnu: r-robust: Move to (gnu packages cran).
discard f85890e563 gnu: r-rngtools: Move to (gnu packages cran).
discard 5f41fe2df9 gnu: r-rmarkdown: Move to (gnu packages cran).
discard 4c31f9d0bd gnu: r-rlrsim: Move to (gnu packages cran).
discard 2e6af112d6 gnu: r-rlang: Move to (gnu packages cran).
discard 207675b21b gnu: r-rematch: Move to (gnu packages cran).
discard 793d5023a2 gnu: r-registry: Move to (gnu packages cran).
discard a7cfab9175 gnu: r-reghelper: Move to (gnu packages cran).
discard 972392e57c gnu: r-readr: Move to (gnu packages cran).
discard 7eef648045 gnu: r-rcurl: Move to (gnu packages cran).
discard 4b889213ba gnu: r-rcppprogress: Move to (gnu packages cran).
discard 4e7400b8c0 gnu: r-rcppeigen: Move to (gnu packages cran).
discard 98aaa2f0d1 gnu: r-rcpparmadillo: Move to (gnu packages cran).
discard 0a4ada9145 gnu: r-r-utils: Move to (gnu packages cran).
discard d71e9007aa gnu: r-r-rsp: Move to (gnu packages cran).
discard b6ebd693a1 gnu: r-r-methodss3: Move to (gnu packages cran).
discard 9445bab99b gnu: r-r-oo: Move to (gnu packages cran).
discard ae8e7ca414 gnu: r-r-cache: Move to (gnu packages cran).
discard 2d381bac58 gnu: r-rann: Move to (gnu packages cran).
discard c1377b06b4 gnu: r-ranger: Move to (gnu packages cran).
discard 1032914890 gnu: r-randomforest: Move to (gnu packages cran).
discard d2dd95bad9 gnu: r-rcolorbrewer: Move to (gnu packages cran).
discard 30f383d061 gnu: r-ez: Update to 4.5-0.
discard 650973a8a6 gnu: r-unigd: Update to 0.2.0.
discard e58a9e1b3f gnu: r-tweedie: Update to 3.0.14.
discard 9bca38c325 gnu: r-multcompview: Update to 0.1-11.
discard 20714585e3 gnu: r-stable: Update to 1.1.7.
discard bbf4436f15 gnu: r-rpostgres: Update to 1.4.10.
discard 5ba592f90e gnu: r-msnid: Update to 1.44.2.
discard f769838079 gnu: r-nebulosa: Update to 1.20.1.
discard 06a16125a1 gnu: r-forecast: Update to 9.0.1.
discard 8ae12d91fe gnu: r-gstat: Update to 2.1-5.
discard c6ed28bf75 gnu: r-randomforestsrc: Update to 3.5.1.
discard 1538ed07a0 gnu: r-stars: Update to 0.7-1.
discard 4cd1d6923d gnu: r-vdiffr: Update to 1.0.9.
discard f260da1822 gnu: r-igraph: Update to 2.2.2.
discard e6fbd61cca gnu: r-nanoarrow: Update to 0.8.0.
discard 5cfac1ebde gnu: r-semplot: Update to 1.1.8.
discard 2106ce0c96 gnu: r-semtools: Update to 0.5-8.
discard 943dba72ca gnu: r-fillpattern: Update to 1.0.3.
discard 636948efca gnu: r-xgboost: Update to 3.2.0.1.
discard 943fa1e0c3 gnu: r-xml: Update to 3.99-0.22.
discard ce7d47f566 gnu: r-ggvis: Update to 0.4.10.
discard ada88de2c2 gnu: r-haplo-stats: Update to 1.9.8.2.
discard bfb76abc1c gnu: r-spdep: Update to 1.4-2.
discard 7bb1741dd5 gnu: r-targets: Update to 1.12.0.
discard a5f170d384 gnu: r-tarchetypes: Update to 0.14.0.
discard e1d8b19fd1 gnu: r-flextable: Update to 0.9.11.
discard a75a23720d gnu: r-reticulate: Update to 1.45.0.
discard 34135767b6 gnu: r-later: Update to 1.4.6.
discard cee852f895 gnu: r-simdesign: Update to 2.23.
discard b592ddfb16 gnu: r-np: Update to 0.60-20.
discard 1167b9c75a gnu: r-trust: Update to 0.1-9.
discard c5c9c1249e gnu: r-psychotools: Update to 0.7-6.
discard 8a796c17f2 gnu: r-lpsolveapi: Update to 5.5.2.0-17.15.
discard 13752f0a6b gnu: r-sp: Update to 2.2-1.
discard 76c44ccd8c gnu: r-rcppspdlog: Update to 0.0.27.
discard 01384639bb gnu: r-httr: Update to 1.4.8.
discard 370aa9181d gnu: r-mirai: Update to 2.6.0.
discard 495a38f97b gnu: r-marginaleffects: Update to 0.32.0.
discard ef992af6f5 gnu: r-plotrix: Update to 3.8-14.
discard 0bfa4003a5 gnu: r-dbplyr: Update to 2.5.2.
discard 18eaafa1c3 gnu: r-model4you: Update to 0.9-9.
discard 5a8c2e9fe4 gnu: r-ggpicrust2: Update to 2.5.10.
discard 533a7da687 gnu: r-dunn-test: Update to 1.3.7.
add 3fad9d1ade gnu: trealla: Update to 2.90.22.
add 81d0659535 gnu: sbcl-documentation-utils: Update to 1.2.0-1.cd5b506.
add 60e31b571c gnu: Add go-github-com-theodorsm-covert-dtls.
add e9e410bad1 gnu:
go-gitlab-torproject-org-tpo-anti-censorship-pluggable-transports-snowflake-v2:
Update to 2-2.11.0-0.18dacf4.
add 63f505592e gnu:
go-gitlab-torproject-org-tpo-anti-censorship-pluggable-transports-webtunnel:
Update to 0.0.3.
add 2b1b212d57 gnu: lyrebird: Update to 0.8.1, fix build.
add 1f65495545 gnu: libvpx: Fix CVE-2026-2447.
add 9f04c691bb gnu: icecat: Update to 140.7.1-gnu1 [fixes CVE-2026-2447].
add c19cd88027 gnu: python-pynput: Fix sanity-check failing.
add 49ccba0f07 gnu: go-madns: Fix build.
add a450d2548a gnu: tippecanoe: Fix build by updating to 2.79.0.
add ae43aaadb0 gnu: python-anaconda-cli-base: Update to 0.8.1.
add 423ab6a82c gnu: Add shamogu and shamogu-sdl.
add 597758eadc gnu: Add ssh-tools.
add f3281394b5 gnu: Add python-sseclient-py.
add 8f9517f8f3 gnu: yaml-cpp: Update to 0.9.0.
add fe1ac9e66b gnu: dhtnet: Update to 0.1.0-2.7cadae4.
add 6a3e18991d gnu: jami: Update to 20260216.0.
add 7fe040f38a gnu: make-bootstrap: Fix guile-static properly for the Hurd.
add f02b2fab9d Revert "gnu: make-bootstrap: Fix guile-static for the
64-bit Hurd."
add 4dacefce98 gnu: Add emacs-xdg-launcher.
add b8d25fa5da gnu: python-vunit: Update to 5.0.0-dev.8.
add a104f2de71 gnu: Remove stapler.
add 74a5291ec5 gnu: Remove python-pypdf2.
add 489547e88c gnu: Remove calcmysky-qt5.
add 3855564f5a gnu: Remove ppsspp.
add 03732b485b gnu: Remove tophat.
add 768bd91010 gnu: Remove sundials-openmpi-5.
add 08f155c229 gnu: Remove sundials-5.
add 4d821469b5 gnu: Remove glusterfs.
add 1797f72918 gnu: Remove ghmm.
add 3f9174ce5a gnu: Remove rbldnsd.
add 2a76831a8d gnu: Remove asli.
add 3383344427 gnu: efitools: Disable parallel builds.
add d926044cd5 gnu: efitools: Rewrite using g-exps.
add 40fdbd43a1 gnu: aflplusplus: Drop inheritance from american-fuzzy-lop.
add 2cec827d76 gnu: Remove american-fuzzy-lop.
add dbdc450f55 gnu: Remove qemu-for-american-fuzzy-lop.
add a2a00c2fcc system: Remove nintendo-nes-classic-edition installer.
add de78735598 gnu: Remove u-boot-nintendo-nes-classic-edition.
add effb271ea0 gnu: trealla: Update to 2.90.24.
add 4e4574a7a9 gnu: python-edalize: Update to 0.6.4.
add 7911238d09 system: Remove asus-c201.tmp.
add 51af666373 system: Remove depthcharger bootloader.
add c56a48a317 gnu: Remove vboot-utils.
add a7daab4200 gnu: cross-gnumach-headers: Reset supported-systems.
add 1eb490516f gnu: xhurd-headers: Reset supported-systems.
add 812396104c gnu: xglibc/hurd-headers: Reset supported-systems.
add 760736e5d5 gnu: xhurd-minimal: Reset supported-systems.
add bec6fbad23 gnu: xhurd-core-headers: Reset supported-systems.
add ed12fe96e9 gnu: cross-mig: Support all supported-systems.
add 47b9bcd0d1 gnu: Add gcc-cross-i586-pc-gnu-toolchain.
add b57b0ee8dc gnu: Add gcc-cross-x86_64-pc-gnu-toolchain.
add cf503ca79e gnu: Add cl-sha3.
add 8b23207846 gnu: sbcl-deploy: Update to 3.0.0-3.5d57fcc.
new 325937b7fe gnu: r-dunn-test: Update to 1.3.7.
new 6d9b07a6ad gnu: r-ggpicrust2: Update to 2.5.10.
new 45a59f1a79 gnu: r-model4you: Update to 0.9-9.
new ef0e286f9c gnu: r-dbplyr: Update to 2.5.2.
new 47c0df745f gnu: r-plotrix: Update to 3.8-14.
new 02dd2b21fe gnu: r-marginaleffects: Update to 0.32.0.
new f9d6a4960a gnu: r-mirai: Update to 2.6.0.
new 2d42f063dc gnu: r-httr: Update to 1.4.8.
new 008991e37c gnu: r-rcppspdlog: Update to 0.0.27.
new 0df6beea0f gnu: r-sp: Update to 2.2-1.
new 9a8238c280 gnu: r-lpsolveapi: Update to 5.5.2.0-17.15.
new b49af1fe1c gnu: r-psychotools: Update to 0.7-6.
new 5a40b347a9 gnu: r-trust: Update to 0.1-9.
new 9c68e952f0 gnu: r-np: Update to 0.60-20.
new a13ab4f0f8 gnu: r-simdesign: Update to 2.23.
new a47df6438e gnu: r-later: Update to 1.4.6.
new 141aa15003 gnu: r-reticulate: Update to 1.45.0.
new 3b2f2c9866 gnu: r-flextable: Update to 0.9.11.
new a4a4c76dff gnu: r-tarchetypes: Update to 0.14.0.
new 9827b20534 gnu: r-targets: Update to 1.12.0.
new 51f450acf0 gnu: r-spdep: Update to 1.4-2.
new 6a9facda21 gnu: r-haplo-stats: Update to 1.9.8.2.
new 0bb869100c gnu: r-ggvis: Update to 0.4.10.
new b4ecf157a4 gnu: r-xml: Update to 3.99-0.22.
new fae9d90c01 gnu: r-xgboost: Update to 3.2.0.1.
new c81bbe41b9 gnu: r-fillpattern: Update to 1.0.3.
new 90046c66de gnu: r-semtools: Update to 0.5-8.
new bcf48bacf9 gnu: r-semplot: Update to 1.1.8.
new 7d746e3e52 gnu: r-nanoarrow: Update to 0.8.0.
new cea7c0fb54 gnu: r-igraph: Update to 2.2.2.
new 8ddb61092c gnu: r-vdiffr: Update to 1.0.9.
new 6efba8ba45 gnu: r-stars: Update to 0.7-1.
new 2b3f2da351 gnu: r-randomforestsrc: Update to 3.5.1.
new b5e6c09036 gnu: r-gstat: Update to 2.1-5.
new 162242ed06 gnu: r-forecast: Update to 9.0.1.
new d990228547 gnu: r-nebulosa: Update to 1.20.1.
new 2626a3a4ec gnu: r-msnid: Update to 1.44.2.
new df292843ed gnu: r-rpostgres: Update to 1.4.10.
new d74377c17a gnu: r-stable: Update to 1.1.7.
new 51570a89a8 gnu: r-multcompview: Update to 0.1-11.
new bfc4bb1451 gnu: r-tweedie: Update to 3.0.14.
new 41ed9e0453 gnu: r-unigd: Update to 0.2.0.
new f8261aed85 gnu: r-ez: Update to 4.5-0.
new b13079d1f0 gnu: r-rcolorbrewer: Move to (gnu packages cran).
new 8d1ae6270e gnu: r-randomforest: Move to (gnu packages cran).
new 4d8cdd88db gnu: r-ranger: Move to (gnu packages cran).
new f398f06e66 gnu: r-rann: Move to (gnu packages cran).
new 4682eb2492 gnu: r-r-cache: Move to (gnu packages cran).
new 05622a9d9a gnu: r-r-oo: Move to (gnu packages cran).
new 965aadc68a gnu: r-r-methodss3: Move to (gnu packages cran).
new 4dde33af51 gnu: r-r-rsp: Move to (gnu packages cran).
new 142fb34697 gnu: r-r-utils: Move to (gnu packages cran).
new 8e6ac4f7fb gnu: r-rcpparmadillo: Move to (gnu packages cran).
new f9873be1c8 gnu: r-rcppeigen: Move to (gnu packages cran).
new be723f3f7b gnu: r-rcppprogress: Move to (gnu packages cran).
new f4abffa988 gnu: r-rcurl: Move to (gnu packages cran).
new 31a9692eb8 gnu: r-readr: Move to (gnu packages cran).
new ec37a84d2b gnu: r-reghelper: Move to (gnu packages cran).
new 68fa043939 gnu: r-registry: Move to (gnu packages cran).
new a5ce998119 gnu: r-rematch: Move to (gnu packages cran).
new 3f60115871 gnu: r-rlang: Move to (gnu packages cran).
new 6e895578ad gnu: r-rlrsim: Move to (gnu packages cran).
new 1e5c9cfb39 gnu: r-rmarkdown: Move to (gnu packages cran).
new 01d311ceeb gnu: r-rngtools: Move to (gnu packages cran).
new b0250b055d gnu: r-robust: Move to (gnu packages cran).
new 24d40210d3 gnu: r-robustbase: Move to (gnu packages cran).
new 9839fbe740 gnu: r-rocr: Move to (gnu packages cran).
new ba4b645d65 gnu: r-roxygen2: Move to (gnu packages cran).
new fd2cbd39e3 gnu: r-rprojroot: Move to (gnu packages cran).
new 54218cf89f gnu: r-rrcov: Move to (gnu packages cran).
new def3fd1b12 gnu: r-rsqlite: Move to (gnu packages cran).
new 12353dfbf2 gnu: r-rstudioapi: Move to (gnu packages cran).
new ae86f9954e gnu: r-rtsne: Move to (gnu packages cran).
new bdbe818c67 gnu: r-runit: Move to (gnu packages cran).
new a744c84cce gnu: r-rversions: Move to (gnu packages cran).
new b41560243a gnu: r-vpc: Move to (gnu packages cran).
new 2ca6b72e6f gnu: r-segmented: Move to (gnu packages cran).
new 805c7bdd7b gnu: r-sfsmisc: Move to (gnu packages cran).
new 75c7b6d9b8 gnu: r-simr: Move to (gnu packages cran).
new f9303e259c gnu: r-sn: Move to (gnu packages cran).
new f74d6ed568 gnu: r-snow: Move to (gnu packages cran).
new 4af5e32644 gnu: r-sourcetools: Move to (gnu packages cran).
new 9ba12f3780 gnu: r-sparsem: Move to (gnu packages cran).
new 7ac90cf173 gnu: r-statmod: Move to (gnu packages cran).
new a555bbb5fc gnu: r-synchronicity: Move to (gnu packages cran).
new 410d123389 gnu: r-tclust: Move to (gnu packages cran).
new 96f5c6baf2 gnu: r-testthat: Move to (gnu packages cran).
new 05273efc3b gnu: r-tibble: Move to (gnu packages cran).
new eec6bb5e4b gnu: r-tidyr: Move to (gnu packages cran).
new 51fc8a4b11 gnu: r-tidyselect: Move to (gnu packages cran).
new cd1bbe42a1 gnu: r-tmvnsim: Move to (gnu packages cran).
new 83ffb7e309 gnu: r-trimcluster: Move to (gnu packages cran).
new 73d4e35b4a gnu: r-tsne: Move to (gnu packages cran).
new e01604c317 import/cran: Fix import of packages in single quotes.
new 6f1d37725e gnu: r-cytoml: Update list of ignored native inputs.
new 99ab8e13bb import/cran: Use sets instead of lset-union.
new 703699b344 import/cran: Uniquify inputs.
new 5024696250 gnu: r-animalcules: Update to 1.26.1.
new 915b68dad1 gnu: r-biomart: Update to 2.66.1.
new b55e3dfd9e build-system/r: Add build phase to skip tests.
new cac6da3da7 gnu: r-httr2: Replace custom phase with #:skipped-tests.
new 93bc20a34d gnu: r-cutpointr: Replace custom phase with #:skipped-tests.
new 6f8a92c1bf gnu: r-gfonts: Replace custom phase with #:skipped-tests.
This update added new revisions after undoing existing revisions.
That is to say, some revisions that were in the old version of the
branch are not in the new version. This situation occurs
when a user --force pushes a change and generates a repository
containing something like this:
* -- * -- B -- O -- O -- O (2a795c6971)
\
N -- N -- N refs/heads/r-team (6f8a92c1bf)
You should already have received notification emails for all of the O
revisions, and so the following emails describe only the N revisions
from the common base, B.
Any revisions marked "omit" are not gone; other references still
refer to them. Any revisions marked "discard" are gone forever.
The 103 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile.am | 1 -
gnu/bootloader/depthcharge.scm | 108 -----
gnu/bootloader/u-boot.scm | 6 -
gnu/local.mk | 9 +-
gnu/packages/astronomy.scm | 12 -
gnu/packages/bioconductor.scm | 8 +-
gnu/packages/bioinformatics.scm | 76 ---
gnu/packages/bootloaders.scm | 117 -----
gnu/packages/cran.scm | 41 +-
gnu/packages/cross-base.scm | 11 +-
gnu/packages/cross-toolchain.scm | 6 +
gnu/packages/debug.scm | 455 ++++++------------
gnu/packages/dns.scm | 54 ---
gnu/packages/efi.scm | 67 ++-
gnu/packages/electronics.scm | 13 +-
gnu/packages/emacs-xyz.scm | 27 ++
gnu/packages/emulators.scm | 152 ------
gnu/packages/file-systems.scm | 63 ---
gnu/packages/games.scm | 57 +++
gnu/packages/geo.scm | 29 +-
gnu/packages/gnuzilla.scm | 10 +-
gnu/packages/golang-web.scm | 81 +++-
gnu/packages/graphics.scm | 76 ---
gnu/packages/jami.scm | 8 +-
gnu/packages/lisp-xyz.scm | 60 ++-
gnu/packages/machine-learning.scm | 77 ---
gnu/packages/make-bootstrap.scm | 9 +-
gnu/packages/maths.scm | 23 -
gnu/packages/networking.scm | 6 +-
.../patches/guile-3.0-linux-syscalls.patch | 24 +-
gnu/packages/patches/icecat-makeicecat.patch | 6 +-
gnu/packages/patches/libvpx-CVE-2026-2447.patch | 96 ++++
.../patches/ppsspp-disable-upgrade-and-gold.patch | 527 ---------------------
gnu/packages/patches/qemu-glibc-2.27.patch | 55 ---
gnu/packages/patches/qemu-glibc-2.30.patch | 57 ---
.../patches/u-boot-nintendo-nes-serial.patch | 14 -
.../vboot-utils-fix-format-load-address.patch | 33 --
.../vboot-utils-fix-tests-show-contents.patch | 142 ------
.../patches/vboot-utils-skip-test-workbuf.patch | 21 -
gnu/packages/pdf.scm | 88 ----
gnu/packages/prolog.scm | 4 +-
gnu/packages/python-web.scm | 26 +
gnu/packages/python-xyz.scm | 7 +-
gnu/packages/serialization.scm | 56 +--
gnu/packages/ssh.scm | 84 ++++
gnu/packages/video.scm | 6 +
gnu/system/examples/asus-c201.tmpl | 61 ---
gnu/system/install.scm | 6 -
guix/build-system/r.scm | 6 +-
guix/build/r-build-system.scm | 34 +-
guix/import/cran.scm | 17 +-
51 files changed, 743 insertions(+), 2289 deletions(-)
delete mode 100644 gnu/bootloader/depthcharge.scm
create mode 100644 gnu/packages/patches/libvpx-CVE-2026-2447.patch
delete mode 100644 gnu/packages/patches/ppsspp-disable-upgrade-and-gold.patch
delete mode 100644 gnu/packages/patches/qemu-glibc-2.27.patch
delete mode 100644 gnu/packages/patches/qemu-glibc-2.30.patch
delete mode 100644 gnu/packages/patches/u-boot-nintendo-nes-serial.patch
delete mode 100644
gnu/packages/patches/vboot-utils-fix-format-load-address.patch
delete mode 100644
gnu/packages/patches/vboot-utils-fix-tests-show-contents.patch
delete mode 100644 gnu/packages/patches/vboot-utils-skip-test-workbuf.patch
delete mode 100644 gnu/system/examples/asus-c201.tmpl
