guix_mirror_bot pushed a change to branch r-team
in repository guix.
discard 1035017fcb gnu: apache-arrow: Update to 23.0.1.
discard 7cf9850353 gnu: r-eyelinker: Update to 0.2.2.
discard ce5f06ffed gnu: r-mlr3viz: Update to 0.11.0.
discard 3559335b9f gnu: r-seqminer: Update to 9.9.
discard 67d3e3f34c gnu: r-survminer: Update to 0.5.2.
discard ae2da4e213 gnu: r-consrank: Update to 3.0.
discard 01e9c220bc gnu: r-univoutl: Update to 0.5.0.
discard 54da6e2771 gnu: r-actcd: Update to 1.4-0.
discard 0280ffe76d gnu: r-graphlayouts: Update to 1.2.3.
discard 7d11851b90 gnu: r-xtable: Update to 1.8-8.
discard 1f48f45abb gnu: r-arrow: Update to 23.0.1.1.
discard 845aea72d6 gnu: r-sf: Update to 1.1-0.
discard 8ee041f896 gnu: r-testit: Update to 0.16.
discard 9c6e7e95c0 gnu: r-tweedie: Update to 3.0.16.
discard e0ab0560ec gnu: r-survey: Update to 4.5.
discard 9ad3fb0dd0 gnu: r-ggpubr: Update to 0.6.3.
discard 9a23fde1a3 gnu: r-later: Update to 1.4.7.
discard 4b37e13e35 gnu: r-simdesign: Update to 2.24.
discard 25224aa909 gnu: r-raceid: Update to 0.4.0.
discard b9e61b9723 gnu: r-scatterplot3d: Update to 0.3-45.
discard 211aa11742 gnu: r-ips: Update to 0.0.13.
discard 7683355f4e gnu: r-useful: Update to 1.2.7.
discard f41b2fba3a gnu: r-pls: Update to 2.9-0.
discard c6c04b154a gnu: r-caliberrfimpute: Update to 1.0-8.
discard 595cb21c50 gnu: r-snowflakeauth: Update to 0.2.2.
discard de0fa02b7e gnu: r-sn: Update to 2.1.3.
discard 915fc60e5a gnu: r-ggalluvial: Update to 0.12.6.
discard 57dfc2bccd gnu: r-ggiraph: Update to 0.9.6.
discard 10632e0c73 gnu: r-ggrepel: Update to 0.9.7.
discard bec682307b gnu: r-vcfr: Update to 1.16.0.
discard a87de942f1 gnu: r-dbi: Update to 1.3.0.
discard 53c44fcac0 gnu: r-smoof: Update to 1.7.0.
discard 7387226dac gnu: r-argparser: Update to 0.7.3.
discard 6c6a9b7697 gnu: python-pytorch-for-r-torch: Use python-build-system.
discard 2283fe97a3 gnu: r-iotools: Update to 0.4-0.
discard 33332d918e gnu: r-fauxpas: Update to 0.6.0.
discard 38e8604ecb gnu: r-paws-common: Update to 0.8.9.
discard 30d0f47968 gnu: r-mlr3: Update to 1.4.0.
discard 3273080acd gnu: r-mlr3misc: Update to 0.20.0.
discard bb305aba0f gnu: r-lobstr: Update to 1.2.0.
discard 0011008e95 gnu: r-rselenium: Update to 1.7.10.
discard 93700fcfcb gnu: r-ada: Update to 2.0-5.1.
discard a36a8ed7cc gnu: r-clue: Update to 0.3-67.
discard 019bdd9bb7 gnu: r-gridtext: Update to 0.1.6.
discard ffeafff8e7 gnu: r-mlbench: Update to 2.1-7.
discard 205dd6d49b gnu: r-rms: Update to 8.1-1.
discard c9e6ffa469 gnu: r-future-apply: Update to 1.20.2.
discard 23024b1201 gnu: r-huge: Update to 1.4.
discard c52dcf2efc gnu: r-tm: Update to 0.7-18.
discard 20d1f19df1 gnu: r-fmesher: Update to 0.7.0.
discard 244e62e459 gnu: r-ncmisc: Update to 1.3.1.
discard 5ffaea4932 gnu: r-dofuture: Update to 1.2.1.
discard be13eca1a7 gnu: r-tseries: Update to 0.10-60.
discard 64ebd63821 gnu: r-laplacesdemon: Update to 16.1.8.
discard dda355ec70 gnu: r-relations: Update to 0.6-16.
discard 64a446c54f gnu: r-gap: Update to 1.14.
discard 28c627c796 gnu: r-readr: Update to 2.2.0.
discard 118b20a611 gnu: r-fuzzyjoin: Update to 0.1.8.
discard ac9e9bf57b gnu: r-effects: Update to 4.2-5.
discard b5cd01b8c2 gnu: r-ggiraph: Update to 0.9.5.
discard 7933f00ac4 gnu: r-flare: Update to 1.8.
discard 5f43e1b9ca gnu: r-bb: Update to 2026.1.0.
discard 17cfdb92a7 gnu: r-ecosolver: Update to 0.6.1.
discard f3a5588ded gnu: r-voltron: Replace custom phase with #:skipped-tests.
discard b20a9ee421 gnu: r-caretensemble: Replace custom phase with
#:skipped-tests.
discard fe1290ba83 gnu: r-lightgbm: Replace custom phase with #:skipped-tests.
discard 9b03bc1e1d gnu: r-rvenn: Replace custom phase with #:skipped-tests.
discard bb553007cd gnu: r-mosaic: Replace custom phase with #:skipped-tests.
discard ffdac7825a gnu: r-rsconnect: Replace custom phase with #:skipped-tests.
discard a8017a2ba7 gnu: r-phangorn: Replace custom phase with #:skipped-tests.
discard bf3351e6e8 gnu: r-latex2exp: Replace custom phase with #:skipped-tests.
discard e929c3f72b gnu: r-glmmtmb: Replace custom phase with #:skipped-tests.
discard 957e439468 gnu: r-options: Replace custom phase with #:skipped-tests.
discard 77c9f252f8 gnu: r-seqminer: Replace custom phase with #:skipped-tests.
discard 40158d381f gnu: r-seqminer: Add missing inputs.
discard 375c113200 gnu: r-arrow: Replace custom phase with #:skipped-tests.
discard 815076b029 gnu: r-proxyc: Replace custom phase with #:skipped-tests.
discard c5c51b626e gnu: r-bedr: Replace custom phase with #:skipped-tests.
discard 1856519f17 gnu: r-data-tree: Replace custom phase with #:skipped-tests.
discard d482eaae06 gnu: r-bindr: Replace custom phase with #:skipped-tests.
discard cb63cce702 gnu: r-flextable: Replace custom phase with #:skipped-tests.
discard 3b7f27a2fc gnu: r-lintr: Replace custom phase with #:skipped-tests.
discard b7467ac206 gnu: r-workflows: Replace custom phase with #:skipped-tests.
discard 3a2b0e2958 gnu: r-mi: Enable all tests.
discard 709c6719b8 gnu: r-rstpm2: Enable all tests.
discard 6b5f96edef gnu: r-trycatchlog: Replace custom phase with
#:skipped-tests.
discard 1462c23e15 gnu: r-bslib: Replace custom phase with #:skipped-tests.
discard f408007c78 gnu: r-datawizard: Replace custom phase with
#:skipped-tests.
discard c8c04aaa0a gnu: r-ggdist: Replace custom phase with #:skipped-tests.
discard e7572040c7 gnu: r-tailor: Replace custom phase with #:skipped-tests.
discard 7ee76354e0 gnu: r-vcr: Replace custom phase with #:skipped-tests.
discard 4be69ccbe6 gnu: r-readr: Replace custom phase with #:skipped-tests.
discard bf615a96db gnu: r-gfonts: Replace custom phase with #:skipped-tests.
discard a2d50a0c16 gnu: r-cutpointr: Replace custom phase with #:skipped-tests.
discard 1a6973d5fb gnu: r-httr2: Replace custom phase with #:skipped-tests.
discard 41389b0cfd build-system/r: Add build phase to skip tests.
discard 7f934f2cbc gnu: r-biomart: Update to 2.66.1.
discard 283ac6af0b gnu: r-animalcules: Update to 1.26.1.
discard 53bc29cacc import/cran: Uniquify inputs.
discard 4c1e2763da import/cran: Use sets instead of lset-union.
discard a7c65db957 gnu: r-cytoml: Update list of ignored native inputs.
discard e4359818fe import/cran: Fix import of packages in single quotes.
discard c308e7681c gnu: r-tsne: Move to (gnu packages cran).
discard 4ec87d6b81 gnu: r-trimcluster: Move to (gnu packages cran).
discard 62c17b2299 gnu: r-tmvnsim: Move to (gnu packages cran).
discard 21f2529bf2 gnu: r-tidyselect: Move to (gnu packages cran).
discard 34ff36b960 gnu: r-tidyr: Move to (gnu packages cran).
discard ed1693c80d gnu: r-tibble: Move to (gnu packages cran).
discard bb844333a8 gnu: r-testthat: Move to (gnu packages cran).
discard 7113c8214e gnu: r-tclust: Move to (gnu packages cran).
discard ae5dbfe6e6 gnu: r-synchronicity: Move to (gnu packages cran).
discard a269851a01 gnu: r-statmod: Move to (gnu packages cran).
discard cbb9ee8408 gnu: r-sparsem: Move to (gnu packages cran).
discard 5904e6a6a8 gnu: r-sourcetools: Move to (gnu packages cran).
discard efb44a096a gnu: r-snow: Move to (gnu packages cran).
discard 6a7e0f73a3 gnu: r-sn: Move to (gnu packages cran).
discard bf356f90bf gnu: r-simr: Move to (gnu packages cran).
discard d50af58b94 gnu: r-sfsmisc: Move to (gnu packages cran).
discard 4de4201f85 gnu: r-segmented: Move to (gnu packages cran).
discard eaebb71915 gnu: r-vpc: Move to (gnu packages cran).
discard 4f928003ad gnu: r-rversions: Move to (gnu packages cran).
discard 4774c6de86 gnu: r-runit: Move to (gnu packages cran).
discard 839e58728c gnu: r-rtsne: Move to (gnu packages cran).
discard fc6917524b gnu: r-rstudioapi: Move to (gnu packages cran).
discard dad699a764 gnu: r-rsqlite: Move to (gnu packages cran).
discard 29bf53621e gnu: r-rrcov: Move to (gnu packages cran).
discard 82c6b534d9 gnu: r-rprojroot: Move to (gnu packages cran).
discard d4cbf6b937 gnu: r-roxygen2: Move to (gnu packages cran).
discard a5443446ac gnu: r-rocr: Move to (gnu packages cran).
discard c82faf4cec gnu: r-robustbase: Move to (gnu packages cran).
discard 7de29eaee4 gnu: r-robust: Move to (gnu packages cran).
discard b9ef017bc3 gnu: r-rngtools: Move to (gnu packages cran).
discard 2398a50464 gnu: r-rmarkdown: Move to (gnu packages cran).
discard 93ba872413 gnu: r-rlrsim: Move to (gnu packages cran).
discard 3037ca0f30 gnu: r-rlang: Move to (gnu packages cran).
discard 8d93e5d8d7 gnu: r-rematch: Move to (gnu packages cran).
discard e0b7f6d4a1 gnu: r-registry: Move to (gnu packages cran).
discard 45ec7e3c9b gnu: r-reghelper: Move to (gnu packages cran).
discard 43c6213fc1 gnu: r-readr: Move to (gnu packages cran).
discard f788b4ed7f gnu: r-rcurl: Move to (gnu packages cran).
discard 0f030276c6 gnu: r-rcppprogress: Move to (gnu packages cran).
discard 811bbb14ec gnu: r-rcppeigen: Move to (gnu packages cran).
discard c502782500 gnu: r-rcpparmadillo: Move to (gnu packages cran).
discard 636e3ebcb6 gnu: r-r-utils: Move to (gnu packages cran).
discard 9e49bf8222 gnu: r-r-rsp: Move to (gnu packages cran).
discard 8206afc93f gnu: r-r-methodss3: Move to (gnu packages cran).
discard 2c10471e52 gnu: r-r-oo: Move to (gnu packages cran).
discard d46b2ead77 gnu: r-r-cache: Move to (gnu packages cran).
discard 5140014130 gnu: r-rann: Move to (gnu packages cran).
discard 33ab2ff8ad gnu: r-ranger: Move to (gnu packages cran).
discard c807dd2460 gnu: r-randomforest: Move to (gnu packages cran).
discard e20ddc8ca5 gnu: r-rcolorbrewer: Move to (gnu packages cran).
discard b3955831af gnu: r-ez: Update to 4.5-0.
discard d0a25e3b62 gnu: r-unigd: Update to 0.2.0.
discard 2b1eb918cd gnu: r-tweedie: Update to 3.0.14.
discard 0e185e6819 gnu: r-multcompview: Update to 0.1-11.
discard 332f03d415 gnu: r-stable: Update to 1.1.7.
discard 8dca176eda gnu: r-rpostgres: Update to 1.4.10.
discard 664d2015e2 gnu: r-msnid: Update to 1.44.2.
discard aec9dec29d gnu: r-nebulosa: Update to 1.20.1.
discard 2c7a928c3c gnu: r-forecast: Update to 9.0.1.
discard 0e7266647a gnu: r-gstat: Update to 2.1-5.
discard e487b0fd62 gnu: r-randomforestsrc: Update to 3.5.1.
discard 1462149de1 gnu: r-stars: Update to 0.7-1.
discard 432d94a84e gnu: r-vdiffr: Update to 1.0.9.
discard 3471670da6 gnu: r-igraph: Update to 2.2.2.
discard c2abfdfacc gnu: r-nanoarrow: Update to 0.8.0.
discard dec7812aff gnu: r-semplot: Update to 1.1.8.
discard 4530f89f9d gnu: r-semtools: Update to 0.5-8.
discard 6706b66d97 gnu: r-fillpattern: Update to 1.0.3.
discard 79115f05b2 gnu: r-xgboost: Update to 3.2.0.1.
discard e07d5fdcf5 gnu: r-xml: Update to 3.99-0.22.
discard 3f544a544c gnu: r-ggvis: Update to 0.4.10.
discard ce90572e85 gnu: r-haplo-stats: Update to 1.9.8.2.
discard 21c8436e16 gnu: r-spdep: Update to 1.4-2.
discard 4bd210c81a gnu: r-targets: Update to 1.12.0.
discard 10f39ad1d4 gnu: r-tarchetypes: Update to 0.14.0.
discard 53dfaa0c6f gnu: r-flextable: Update to 0.9.11.
discard b100cee27a gnu: r-reticulate: Update to 1.45.0.
discard ffcc5b0893 gnu: r-later: Update to 1.4.6.
discard 8863b3b931 gnu: r-simdesign: Update to 2.23.
discard dcd82c8892 gnu: r-np: Update to 0.60-20.
discard 79761e6b1c gnu: r-trust: Update to 0.1-9.
discard c1430d62c8 gnu: r-psychotools: Update to 0.7-6.
discard 006b791e0b gnu: r-lpsolveapi: Update to 5.5.2.0-17.15.
discard ad645362b4 gnu: r-sp: Update to 2.2-1.
discard 1f70a9a029 gnu: r-rcppspdlog: Update to 0.0.27.
discard 25c691dd04 gnu: r-httr: Update to 1.4.8.
discard 6657b94d92 gnu: r-mirai: Update to 2.6.0.
discard 04795e0677 gnu: r-marginaleffects: Update to 0.32.0.
discard c53c98b0fe gnu: r-plotrix: Update to 3.8-14.
discard f3756db70c gnu: r-dbplyr: Update to 2.5.2.
discard b61815f5e6 gnu: r-model4you: Update to 0.9-9.
discard ac7abbbdca gnu: r-ggpicrust2: Update to 2.5.10.
discard 0afa8c2d3a gnu: r-dunn-test: Update to 1.3.7.
add 6b6f994781 gnu: go-github-com-charmbracelet-x-ansi: Use git-fetch/lfs.
add 09f1b0845d gnu: go-github-com-charmbracelet-x-cellbuf: Use
git-fetch/lfs.
add 80877c4dac gnu: go-github-com-charmbracelet-x-exp-golden: Use
git-fetch/lfs.
add 98e420ad54 gnu: go-github-com-charmbracelet-x-exp-slice: Use
git-fetch/lfs.
add 2f98b83322 gnu: go-github-com-charmbracelet-x-input: Use git-fetch/lfs.
add 3722e939af gnu: go-github-com-charmbracelet-x-term: Use git-fetch/lfs.
add 966ea79366 gnu: go-github-com-charmbracelet-x-windows: Use
git-fetch/lfs.
add 6e4090ae63 gnu: Add go-github-com-charmbracelet-x-errors.
add 601db48ae2 gnu: Add go-github-com-ncruces-julianday.
add b5f97062e5 gnu: Add go-github-com-ncruces-sort.
add 071ea27a6c gnu: Add wasi-libc.
add 6e6809ff61 gnu: Add wasi-compiler-rt.
add 121ef5ebde gnu: aegisub: Update to 3.4.2.
add 4a8fcdce59 gnu: nim: Update to 2.2.8
add aa5b4588d2 gnu: snac: Update to 2.89
add dc345c27b9 gnu: tlp: Update to 1.9.0
add 8c76d032b6 gnu: tlpui: Update to 1.9.0
add 2ed8aca449 gnu: schemesh: Update to 0.9.3
add ff1497f9ea gnu: git-minimal: Update to 2.53.0
add d7429d59bf gnu: emacs-claude-code-ide: Update to 0.2.6-1-5f12e60.
add d20450cbf4 gnu: fonts: Add font-nerd-fantasque-sans.
add 0722e795cd gnu: turbovnc: Update to 3.3.
add 384aaf9baf gnu: dezyne: Update to 2.20.0.
add 2372afa295 gnu: Add ypsilon.
add 05a3106a52 gnu: Add lemon-graph.
add 2a7e969cfe gnu: Add soplex.
add f1600ecce4 gnu: Add scip.
add b5f3454c22 Revert "gnu: git-minimal: Update to 2.53.0"
add 84e4ab8c55 gnu: ggml: Set backend directory.
add 85fdc74f9e gnu: webkitgtk: Use system malloc.
add 57a6d2a307 gnu: webkitgtk: Refresh input.
add 71ed6aea3d gnu: xkcdpass: Update to 1.30.0.
add 081954f9c9 gnu: ggml: Update to 0.9.7.
add 5da565b2d4 gnu: llama-cpp: Update to 0.0.0-b8054.
add 3704c4937f gnu: trealla: Update to 2.90.40.
add 834144fa8a gnu: janet: Update to 1.41.2.
add 625fc6994b gnu: swig-next: Update to 4.4.1.
add 5f3cd42859 gnu: Deprecate swig and swig-next in vafor of swig-4.0 and
swig-4.4.
add 929b910613 gnu: llama-cpp: Remove unused dependency on openblas.
add e9cd66893f gnu: whisper-cpp: Update to 1.8.3-1.364c77f.
add f3afe1496a gnu: whisper-cpp: Unbundle ggml.
add 4d0fe6995b gnu: Add qman.
add 8499852a40 gnu: tz: Update to 0.8.0.
add a39d2337cb gnu: liquidprompt: Update to 2.2.1.
add 3dfa0056fe gnu: labwc: Update to 0.9.4.
add 59f21f7daf gnu: rizin: Update to 0.8.2 [security-fixes].
add 76bf3baa17 gnu: Add mangowc.
add 264fe8ee5a gnu: vmware-open-vm-tools: Update to 13.0.10.
add 73e5fc3854 system: examples: Remove comments on missing login prompt
on hurd64.
add c7f7cdd321 gnu: make-glibc-locales: Fix build on the Hurd.
add d6cd20d0e5 gnu: hipblaslt: Build for MI250 GPUs only.
add d16dcad885 gnu: guile-sodium: Update to 0.3.0.
add 1892626390 system: gdbinit: Fix default ‘debug-file-directory’ for
user profiles.
add a1611ced6d system: gdbinit: Save command history by default.
add 865cb0188c daemon: Actually remove unreadable directories.
add ac668a473d doc: Refer to more online manuals at doc.guix.gnu.org.
add 57e10b6161 gnu: uriparser: Update to 1.0.0 [security fixes].
add 295a09f7c0 gnu: Update praat to 6.4.52.
add eef3d007ba gnu: deskflow: Update to 1.25.0.
add 9cfaf6fcde gnu: atomicparsley: Indent.
add 2546eb7990 gnu: atomicparsley: Remove now-unneeded phase.
add edcd2bbcc5 gnu: atomicparsley: Use GEXPs.
add 4290a1143e gnu: atomicparsley: Update to 20240608.083822.1ed9031.
add 17721e2f63 gnu: Add acarsdec.
add 2bdbeec918 gnu: Add emacs-geiser-hoot.
add 839fb8514d gnu: xandikos: Fix tests.
add 556fed9c76 gnu: cl-simple-matrix: Update to 3.15.
add 3d31685289 gnu: emacs-org2web: Remove obsolete build phase.
add af351caaa3 gnu: radare2: Update to 6.1.0.
add d4bcfdd0e2 gnu: iaito: Update to 6.0.8-2.5f44a32.
add 828279617b gnu: monero: Update to 0.18.4.6.
add 4cc3d250da gnu: monero-gui: Update to 0.18.4.6.
add 7ce4e3a9ba gnu: scip: Add support for lapack.
add 832f5ea81a gnu: protobuf: Drop static output.
add d6968ece87 gnu: Add or-tools.
new 03bc4d1ed5 gnu: r-dunn-test: Update to 1.3.7.
new 41e03f3438 gnu: r-ggpicrust2: Update to 2.5.10.
new 2d3fff3d51 gnu: r-model4you: Update to 0.9-9.
new 4ef6d10968 gnu: r-dbplyr: Update to 2.5.2.
new 9ac65ae7b6 gnu: r-plotrix: Update to 3.8-14.
new 3c21fffd80 gnu: r-marginaleffects: Update to 0.32.0.
new d23918080c gnu: r-mirai: Update to 2.6.0.
new d1a8f8010a gnu: r-httr: Update to 1.4.8.
new 9987a60a3e gnu: r-rcppspdlog: Update to 0.0.27.
new d8187183ed gnu: r-sp: Update to 2.2-1.
new c08bd99463 gnu: r-lpsolveapi: Update to 5.5.2.0-17.15.
new 6e93bc3379 gnu: r-psychotools: Update to 0.7-6.
new 8b1b6c73e0 gnu: r-trust: Update to 0.1-9.
new 6bdb7c3500 gnu: r-np: Update to 0.60-20.
new 2a05ff61f2 gnu: r-simdesign: Update to 2.23.
new 3f141e8442 gnu: r-later: Update to 1.4.6.
new 4dc86c68f9 gnu: r-reticulate: Update to 1.45.0.
new 7e253d5b9d gnu: r-flextable: Update to 0.9.11.
new 2501ae8956 gnu: r-tarchetypes: Update to 0.14.0.
new 9730719a45 gnu: r-targets: Update to 1.12.0.
new 4e05b93a66 gnu: r-spdep: Update to 1.4-2.
new 11a6e51451 gnu: r-haplo-stats: Update to 1.9.8.2.
new 1b0cc2b523 gnu: r-ggvis: Update to 0.4.10.
new 541fe93a9b gnu: r-xml: Update to 3.99-0.22.
new 98d5416f66 gnu: r-xgboost: Update to 3.2.0.1.
new 7c80426fd0 gnu: r-fillpattern: Update to 1.0.3.
new 455cbb200e gnu: r-semtools: Update to 0.5-8.
new 0b8dc89f2b gnu: r-semplot: Update to 1.1.8.
new f21c7ac59a gnu: r-nanoarrow: Update to 0.8.0.
new 12f844f185 gnu: r-igraph: Update to 2.2.2.
new 19c279cebd gnu: r-vdiffr: Update to 1.0.9.
new 00c5fcacc3 gnu: r-stars: Update to 0.7-1.
new 875dbf776e gnu: r-randomforestsrc: Update to 3.5.1.
new 875c8817df gnu: r-gstat: Update to 2.1-5.
new 7295fcaf93 gnu: r-forecast: Update to 9.0.1.
new 941b1f27fb gnu: r-nebulosa: Update to 1.20.1.
new 8ed831e03c gnu: r-msnid: Update to 1.44.2.
new c8d6a4a9ed gnu: r-rpostgres: Update to 1.4.10.
new db506ec10f gnu: r-stable: Update to 1.1.7.
new 0453bc7531 gnu: r-multcompview: Update to 0.1-11.
new e5c35940bb gnu: r-tweedie: Update to 3.0.14.
new 247c48acc5 gnu: r-unigd: Update to 0.2.0.
new 4f564dcda4 gnu: r-ez: Update to 4.5-0.
new 1cd8f2ec69 gnu: r-rcolorbrewer: Move to (gnu packages cran).
new 27d841cdab gnu: r-randomforest: Move to (gnu packages cran).
new 2052012f29 gnu: r-ranger: Move to (gnu packages cran).
new 4d6cacc542 gnu: r-rann: Move to (gnu packages cran).
new 52881d6ec5 gnu: r-r-cache: Move to (gnu packages cran).
new 76bfc38204 gnu: r-r-oo: Move to (gnu packages cran).
new a594b71f98 gnu: r-r-methodss3: Move to (gnu packages cran).
new 7920d86e1f gnu: r-r-rsp: Move to (gnu packages cran).
new aa36234137 gnu: r-r-utils: Move to (gnu packages cran).
new 117c091c44 gnu: r-rcpparmadillo: Move to (gnu packages cran).
new d77b2fcf7c gnu: r-rcppeigen: Move to (gnu packages cran).
new f324a35b77 gnu: r-rcppprogress: Move to (gnu packages cran).
new 0ad06b0e7c gnu: r-rcurl: Move to (gnu packages cran).
new e7644af7e7 gnu: r-readr: Move to (gnu packages cran).
new 49cc63b92f gnu: r-reghelper: Move to (gnu packages cran).
new dcc2e6551c gnu: r-registry: Move to (gnu packages cran).
new ba4f8bab16 gnu: r-rematch: Move to (gnu packages cran).
new 03343e25a2 gnu: r-rlang: Move to (gnu packages cran).
new 373724e6ff gnu: r-rlrsim: Move to (gnu packages cran).
new fe90e6a740 gnu: r-rmarkdown: Move to (gnu packages cran).
new ad46d4d077 gnu: r-rngtools: Move to (gnu packages cran).
new 2d934aa031 gnu: r-robust: Move to (gnu packages cran).
new 5480a8f08e gnu: r-robustbase: Move to (gnu packages cran).
new 8e6b0c2eb6 gnu: r-rocr: Move to (gnu packages cran).
new 25f2cc02ec gnu: r-roxygen2: Move to (gnu packages cran).
new 7710294d8a gnu: r-rprojroot: Move to (gnu packages cran).
new 4cd2b1df6c gnu: r-rrcov: Move to (gnu packages cran).
new 876dc68558 gnu: r-rsqlite: Move to (gnu packages cran).
new 2677761f18 gnu: r-rstudioapi: Move to (gnu packages cran).
new c19723eef2 gnu: r-rtsne: Move to (gnu packages cran).
new 0066c6987b gnu: r-runit: Move to (gnu packages cran).
new de200a7a6a gnu: r-rversions: Move to (gnu packages cran).
new 1375ca33dc gnu: r-vpc: Move to (gnu packages cran).
new 414b152362 gnu: r-segmented: Move to (gnu packages cran).
new 52844c8bfb gnu: r-sfsmisc: Move to (gnu packages cran).
new 013b843006 gnu: r-simr: Move to (gnu packages cran).
new 01a21944bb gnu: r-sn: Move to (gnu packages cran).
new 3307c66b9d gnu: r-snow: Move to (gnu packages cran).
new 3f4e0aeec6 gnu: r-sourcetools: Move to (gnu packages cran).
new 215f8cffac gnu: r-sparsem: Move to (gnu packages cran).
new d36c87e811 gnu: r-statmod: Move to (gnu packages cran).
new db1a891cb4 gnu: r-synchronicity: Move to (gnu packages cran).
new 42893cf23e gnu: r-tclust: Move to (gnu packages cran).
new a817f4edc7 gnu: r-testthat: Move to (gnu packages cran).
new 948753459e gnu: r-tibble: Move to (gnu packages cran).
new 5c0004764a gnu: r-tidyr: Move to (gnu packages cran).
new 68e259a93b gnu: r-tidyselect: Move to (gnu packages cran).
new 40226f9d7a gnu: r-tmvnsim: Move to (gnu packages cran).
new 01912dabff gnu: r-trimcluster: Move to (gnu packages cran).
new 0cf3d77366 gnu: r-tsne: Move to (gnu packages cran).
new 870b0ea837 import/cran: Fix import of packages in single quotes.
new 638367bf9b gnu: r-cytoml: Update list of ignored native inputs.
new 63802565a2 import/cran: Use sets instead of lset-union.
new 1fb59f91b4 import/cran: Uniquify inputs.
new cc6beed4f2 gnu: r-animalcules: Update to 1.26.1.
new 3721956734 gnu: r-biomart: Update to 2.66.1.
new 7032d7c2dc build-system/r: Add build phase to skip tests.
new b356ce95a3 gnu: r-httr2: Replace custom phase with #:skipped-tests.
new 4e2c1b98f5 gnu: r-cutpointr: Replace custom phase with #:skipped-tests.
new 3482c806e7 gnu: r-gfonts: Replace custom phase with #:skipped-tests.
new 9428d8a88e gnu: r-readr: Replace custom phase with #:skipped-tests.
new 9ccb24a9f2 gnu: r-vcr: Replace custom phase with #:skipped-tests.
new 0c272621af gnu: r-tailor: Replace custom phase with #:skipped-tests.
new c741ab456b gnu: r-ggdist: Replace custom phase with #:skipped-tests.
new 661ed27448 gnu: r-datawizard: Replace custom phase with
#:skipped-tests.
new 637bd78d89 gnu: r-bslib: Replace custom phase with #:skipped-tests.
new 662d0c410d gnu: r-trycatchlog: Replace custom phase with
#:skipped-tests.
new 385222e16f gnu: r-rstpm2: Enable all tests.
new 0df148306b gnu: r-mi: Enable all tests.
new e2089e94a9 gnu: r-workflows: Replace custom phase with #:skipped-tests.
new 2f72fbd462 gnu: r-lintr: Replace custom phase with #:skipped-tests.
new ff55c92edb gnu: r-flextable: Replace custom phase with #:skipped-tests.
new 081f1cc3e3 gnu: r-bindr: Replace custom phase with #:skipped-tests.
new 26b49a2f15 gnu: r-data-tree: Replace custom phase with #:skipped-tests.
new b1e34c3c47 gnu: r-bedr: Replace custom phase with #:skipped-tests.
new 4454602ec3 gnu: r-proxyc: Replace custom phase with #:skipped-tests.
new a1ce8b890d gnu: r-arrow: Replace custom phase with #:skipped-tests.
new 296436ce48 gnu: r-seqminer: Add missing inputs.
new 054a99d099 gnu: r-seqminer: Replace custom phase with #:skipped-tests.
new 7ff169d152 gnu: r-options: Replace custom phase with #:skipped-tests.
new e9051c2d6d gnu: r-glmmtmb: Replace custom phase with #:skipped-tests.
new 326ce00cc7 gnu: r-latex2exp: Replace custom phase with #:skipped-tests.
new 7d1a6bed74 gnu: r-phangorn: Replace custom phase with #:skipped-tests.
new cccac2bbce gnu: r-rsconnect: Replace custom phase with #:skipped-tests.
new 3aead453ae gnu: r-mosaic: Replace custom phase with #:skipped-tests.
new ebd379ca18 gnu: r-rvenn: Replace custom phase with #:skipped-tests.
new 1c398215ea gnu: r-lightgbm: Replace custom phase with #:skipped-tests.
new 8d2d4a4ce2 gnu: r-caretensemble: Replace custom phase with
#:skipped-tests.
new 74f903e3f4 gnu: r-voltron: Replace custom phase with #:skipped-tests.
new 53db45ebd9 gnu: r-ecosolver: Update to 0.6.1.
new be4af86f98 gnu: r-bb: Update to 2026.1.0.
new d45a0c8cd3 gnu: r-flare: Update to 1.8.
new f84f8f929a gnu: r-ggiraph: Update to 0.9.5.
new 477b84ec3d gnu: r-effects: Update to 4.2-5.
new 12afe2543c gnu: r-fuzzyjoin: Update to 0.1.8.
new f5e853d5df gnu: r-readr: Update to 2.2.0.
new 96a5045f3b gnu: r-gap: Update to 1.14.
new b92ad20fe3 gnu: r-relations: Update to 0.6-16.
new b70281a222 gnu: r-laplacesdemon: Update to 16.1.8.
new 97b1246c55 gnu: r-tseries: Update to 0.10-60.
new e254bc938e gnu: r-dofuture: Update to 1.2.1.
new b4c5a900cc gnu: r-ncmisc: Update to 1.3.1.
new 0383d09b10 gnu: r-fmesher: Update to 0.7.0.
new 78ed4b0759 gnu: r-tm: Update to 0.7-18.
new 3a0157dd0c gnu: r-huge: Update to 1.4.
new 00eb60077a gnu: r-future-apply: Update to 1.20.2.
new d4bf20edd4 gnu: r-rms: Update to 8.1-1.
new 3986d4421c gnu: r-mlbench: Update to 2.1-7.
new 7e27786bbb gnu: r-gridtext: Update to 0.1.6.
new 7496bfdf2f gnu: r-clue: Update to 0.3-67.
new a1e001ed5f gnu: r-ada: Update to 2.0-5.1.
new f9749d1e80 gnu: r-rselenium: Update to 1.7.10.
new a0efa03e39 gnu: r-lobstr: Update to 1.2.0.
new 9f02b1b78c gnu: r-mlr3misc: Update to 0.20.0.
new f6f71df983 gnu: r-mlr3: Update to 1.4.0.
new faf45f6e34 gnu: r-paws-common: Update to 0.8.9.
new a23a220493 gnu: r-fauxpas: Update to 0.6.0.
new 83af3b1db3 gnu: r-iotools: Update to 0.4-0.
new 563a80766d gnu: python-pytorch-for-r-torch: Use python-build-system.
new f177536aee gnu: r-argparser: Update to 0.7.3.
new 7c463d50b1 gnu: r-smoof: Update to 1.7.0.
new cae96a5c78 gnu: r-dbi: Update to 1.3.0.
new 1e3e48874d gnu: r-vcfr: Update to 1.16.0.
new eed5831f5e gnu: r-ggrepel: Update to 0.9.7.
new b9d9a84081 gnu: r-ggiraph: Update to 0.9.6.
new 7da627c285 gnu: r-ggalluvial: Update to 0.12.6.
new c6631faed6 gnu: r-sn: Update to 2.1.3.
new a7976fb46a gnu: r-snowflakeauth: Update to 0.2.2.
new a7ac6c5b31 gnu: r-caliberrfimpute: Update to 1.0-8.
new 12a95a3d92 gnu: r-pls: Update to 2.9-0.
new cc0f722fef gnu: r-useful: Update to 1.2.7.
new b27c694e5f gnu: r-ips: Update to 0.0.13.
new 01b38bb7e3 gnu: r-scatterplot3d: Update to 0.3-45.
new 7b3bc0e451 gnu: r-raceid: Update to 0.4.0.
new c03b326395 gnu: r-simdesign: Update to 2.24.
new a9ddc408ea gnu: r-later: Update to 1.4.7.
new c8da8e9341 gnu: r-ggpubr: Update to 0.6.3.
new 3b264da562 gnu: r-survey: Update to 4.5.
new e88b7ece8e gnu: r-tweedie: Update to 3.0.16.
new 8387d32d68 gnu: r-testit: Update to 0.16.
new fb4deb3ed7 gnu: r-sf: Update to 1.1-0.
new f163b33781 gnu: r-arrow: Update to 23.0.1.1.
new 53ab672d26 gnu: r-xtable: Update to 1.8-8.
new 3432d63f0b gnu: r-graphlayouts: Update to 1.2.3.
new 54056c4553 gnu: r-actcd: Update to 1.4-0.
new 663d7c7262 gnu: r-univoutl: Update to 0.5.0.
new fe2de78820 gnu: r-consrank: Update to 3.0.
new e641405bce gnu: r-survminer: Update to 0.5.2.
new 7ea6bb11ef gnu: r-seqminer: Update to 9.9.
new 1b6b619558 gnu: r-mlr3viz: Update to 0.11.0.
new f750053f79 gnu: r-eyelinker: Update to 0.2.2.
new 41fb109b90 gnu: apache-arrow: Update to 23.0.1.
new 6ba4fb31f7 gnu: r-survcomp: Update to 1.60.1.
new 1428870b9a gnu: r-illuminahumanmethylationepicv2anno-20a1-hg38: Update
to 1.0.1.
new 62f0c23dda gnu: r-illuminahumanmethylationepicv2manifest: Update to
1.0.1.
new 20b6bf8ce3 gnu: r-systempiperdata: Update to 2.14.5.
new 2e18babc52 gnu: r-gsva: Update to 2.4.5.
new e815198813 gnu: r-mutationalpatterns: Update to 3.20.1.
new 0ee4fc1bb4 gnu: r-scdblfinder: Update to 1.24.10.
new 76662249f0 gnu: r-scran: Update to 1.38.1.
This update added new revisions after undoing existing revisions.
That is to say, some revisions that were in the old version of the
branch are not in the new version. This situation occurs
when a user --force pushes a change and generates a repository
containing something like this:
* -- * -- B -- O -- O -- O (1035017fcb)
\
N -- N -- N refs/heads/r-team (76662249f0)
You should already have received notification emails for all of the O
revisions, and so the following emails describe only the N revisions
from the common base, B.
Any revisions marked "omit" are not gone; other references still
refer to them. Any revisions marked "discard" are gone forever.
The 203 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
doc/htmlxref.cnf | 8 +-
gnu/local.mk | 7 +-
gnu/packages/accessibility.scm | 2 +-
gnu/packages/apparmor.scm | 2 +-
gnu/packages/base.scm | 4 +
gnu/packages/bioconductor.scm | 33 +--
gnu/packages/bioinformatics.scm | 6 +-
gnu/packages/bootloaders.scm | 4 +-
gnu/packages/chez.scm | 4 +-
gnu/packages/dav.scm | 2 +-
gnu/packages/dezyne.scm | 4 +-
gnu/packages/disk.scm | 2 +-
gnu/packages/dns.scm | 4 +-
gnu/packages/electronics.scm | 6 +-
gnu/packages/emacs-xyz.scm | 55 +++-
gnu/packages/embedded.scm | 2 +-
gnu/packages/engineering.scm | 118 ++++----
gnu/packages/fabric-management.scm | 2 +-
gnu/packages/fediverse.scm | 6 +-
gnu/packages/finance.scm | 8 +-
gnu/packages/fonts.scm | 128 +++++++++
gnu/packages/game-development.scm | 2 +-
gnu/packages/games.scm | 6 +-
gnu/packages/geo.scm | 4 +-
gnu/packages/gnome.scm | 2 +-
gnu/packages/gnucash.scm | 2 +-
gnu/packages/gnupg.scm | 2 +-
gnu/packages/golang-xyz.scm | 100 ++++++-
gnu/packages/graph.scm | 48 +++-
gnu/packages/graphviz.scm | 2 +-
gnu/packages/guile-xyz.scm | 9 +-
gnu/packages/hardware.scm | 4 +-
gnu/packages/image-processing.scm | 4 +-
gnu/packages/image.scm | 2 +-
gnu/packages/instrumentation.scm | 4 +-
gnu/packages/kodi.scm | 2 +-
gnu/packages/language.scm | 12 +-
gnu/packages/libftdi.scm | 2 +-
gnu/packages/linux.scm | 10 +-
gnu/packages/lisp-xyz.scm | 4 +-
gnu/packages/lisp.scm | 4 +-
gnu/packages/llvm.scm | 2 +-
gnu/packages/machine-learning.scm | 166 +++++-------
gnu/packages/man.scm | 64 +++++
gnu/packages/maths.scm | 135 +++++++++-
gnu/packages/ncurses.scm | 2 +-
gnu/packages/nim.scm | 12 +-
gnu/packages/oneapi.scm | 2 +-
gnu/packages/password-utils.scm | 7 +-
gnu/packages/patches/aegisub-boost68.patch | 35 ---
gnu/packages/patches/aegisub-boost81.patch | 62 -----
.../patches/aegisub-icu59-include-unistr.patch | 12 -
gnu/packages/patches/aegisub-make43.patch | 20 --
gnu/packages/patches/turbovnc-custom-paths.patch | 299 ---------------------
.../patches/turbovnc-find-system-packages.patch | 51 ----
.../ypsilon-Use-GNU-toolchain-as-default.patch | 62 +++++
gnu/packages/pdf.scm | 4 +-
gnu/packages/pretty-print.scm | 2 +-
gnu/packages/prolog.scm | 4 +-
gnu/packages/protobuf.scm | 15 +-
gnu/packages/python-crypto.scm | 2 +-
gnu/packages/python-graphics.scm | 2 +-
gnu/packages/radio.scm | 36 ++-
gnu/packages/rocm-libs.scm | 9 +-
gnu/packages/scheme.scm | 70 +++++
gnu/packages/security-token.scm | 4 +-
gnu/packages/selinux.scm | 6 +-
gnu/packages/shellutils.scm | 20 +-
gnu/packages/speech.scm | 2 +-
gnu/packages/statistics.scm | 4 +-
gnu/packages/swig.scm | 20 +-
gnu/packages/tbb.scm | 2 +-
gnu/packages/time.scm | 16 +-
gnu/packages/version-control.scm | 2 +-
gnu/packages/video.scm | 167 ++++++------
gnu/packages/virtualization.scm | 9 +-
gnu/packages/vnc.scm | 21 +-
gnu/packages/web.scm | 179 +++++++++++-
gnu/packages/webkit.scm | 5 +-
gnu/packages/wm.scm | 61 ++++-
gnu/system/examples/bare-hurd64.tmpl | 2 -
gnu/system/examples/devel-hurd64.tmpl | 2 -
gnu/system/shadow.scm | 33 ++-
nix/libutil/util.cc | 51 +++-
nix/libutil/util.hh | 9 +-
tests/derivations.scm | 16 +-
86 files changed, 1404 insertions(+), 934 deletions(-)
delete mode 100644 gnu/packages/patches/aegisub-boost68.patch
delete mode 100644 gnu/packages/patches/aegisub-boost81.patch
delete mode 100644 gnu/packages/patches/aegisub-icu59-include-unistr.patch
delete mode 100644 gnu/packages/patches/aegisub-make43.patch
delete mode 100644 gnu/packages/patches/turbovnc-custom-paths.patch
delete mode 100644 gnu/packages/patches/turbovnc-find-system-packages.patch
create mode 100644
gnu/packages/patches/ypsilon-Use-GNU-toolchain-as-default.patch
