guix_mirror_bot pushed a change to branch r-team
in repository guix.
discard cfa6456fe9 gnu: r-singlet: Update to 0.99.8-1.ef4a374.
discard 6fcf604e9c gnu: r-rcppml/devel: Update to 0.5.6-3.2beac65.
discard 55fcd5a1bd gnu: r-cvxr: Disable one test.
discard 9e44d312ae gnu: r-phyloseq: Update to 1.54.1.
discard 90c250786d gnu: r-gsva: Update to 2.4.6.
discard b59392f595 gnu: r-mlr3pipelines: Update to 0.11.0.
discard 349a81d51e gnu: r-mlrmbo: Update to 1.1.6.
discard b840dd20cc gnu: r-lhs: Update to 1.2.1.
discard a176d19c2d gnu: r-osqp: Update to 1.0.0.
discard 77ee4a0148 gnu: r-clarabel: Update to 0.11.2.
discard df62744a23 gnu: r-blackbox: Update to 1.1.54.
discard eed9ee5c0d gnu: r-geosphere: Update to 1.6-5.
discard 74c9c477c8 gnu: r-mlr3cluster: Update to 0.3.0.
discard 940d1abd9e gnu: Add r-smotefamily.
discard 060d886e8c gnu: Add r-vtreat.
discard 00f1c6d204 gnu: Add r-wrapr.
discard c6e96754bd gnu: Add r-doe-base.
discard 40616db399 gnu: Add r-conf-design.
discard 1648eb6879 gnu: Add r-numbers.
discard cd27002ab4 gnu: Add r-scpdata.
discard 03a1a4609d gnu: Add r-scp.
discard 5200e0c81c gnu: Add r-msdatahub.
discard 178b045ed9 gnu: r-mlr3cluster: Disable one test.
discard 9271aea03c gnu: r-aster: Disable vignettes.
discard c91c5b3b53 gnu: r-antiword: Update to 1.3.5.
discard f2071c6b57 gnu: r-bbotk: Update to 1.9.0.
discard 1bbb4984bc gnu: r-mlr3: Update to 1.5.0.
discard e79d67f6ac gnu: r-mlr3misc: Update to 0.21.0.
discard 13efb2bb08 gnu: r-mlr3mbo: Update to 1.0.0.
discard 459088a077 gnu: r-tidypredict: Update to 1.1.0.
discard 74a0bce6d0 gnu: r-emojifont: Update to 0.6.0.
discard 7ad46ea5db gnu: r-tweedie: Update to 3.0.17.
discard ec9569fc80 gnu: r-magick: Update to 2.9.1.
discard df7ca08a42 gnu: r-xts: Update to 0.14.2.
discard 12639725b0 gnu: r-rmumps: Update to 5.2.1-37.
discard 0c9ca8fb2a gnu: r-rcppnumerical: Update to 0.7-0.
discard 366e10e55e gnu: r-openssl: Update to 2.3.5.
discard 587c882fe4 gnu: r-countrycode: Update to 1.7.0.
discard 88e3173dd1 gnu: r-scran: Update to 1.38.1.
discard ff6a2d197b gnu: r-scdblfinder: Update to 1.24.10.
discard 43ca248d52 gnu: r-mutationalpatterns: Update to 3.20.1.
discard 6671e64135 gnu: r-gsva: Update to 2.4.5.
discard 56a8f8ae51 gnu: r-systempiperdata: Update to 2.14.5.
discard 05edb1949e gnu: r-illuminahumanmethylationepicv2manifest: Update to
1.0.1.
discard d02719cf2b gnu: r-illuminahumanmethylationepicv2anno-20a1-hg38: Update
to 1.0.1.
discard 9fda769c1b gnu: r-survcomp: Update to 1.60.1.
discard 641c05d196 gnu: apache-arrow: Update to 23.0.1.
discard bc561057cb gnu: r-eyelinker: Update to 0.2.2.
discard 1166d5951b gnu: r-mlr3viz: Update to 0.11.0.
discard 95386e09bc gnu: r-seqminer: Update to 9.9.
discard 071860d212 gnu: r-survminer: Update to 0.5.2.
discard b46d70adff gnu: r-consrank: Update to 3.0.
discard 2989066e5e gnu: r-univoutl: Update to 0.5.0.
discard 2f8d35e6b4 gnu: r-actcd: Update to 1.4-0.
discard aa8cea1243 gnu: r-graphlayouts: Update to 1.2.3.
discard ce1c66907b gnu: r-xtable: Update to 1.8-8.
discard 66337d3646 gnu: r-arrow: Update to 23.0.1.1.
discard c9880a1553 gnu: r-sf: Update to 1.1-0.
discard 7f5014e440 gnu: r-testit: Update to 0.16.
discard 4356c2a87c gnu: r-tweedie: Update to 3.0.16.
discard 3526479dad gnu: r-survey: Update to 4.5.
discard 49232b8325 gnu: r-ggpubr: Update to 0.6.3.
discard c415e45d37 gnu: r-later: Update to 1.4.7.
discard b826379572 gnu: r-simdesign: Update to 2.24.
discard 0534910822 gnu: r-raceid: Update to 0.4.0.
discard 09560136f2 gnu: r-scatterplot3d: Update to 0.3-45.
discard 6b9338e35d gnu: r-ips: Update to 0.0.13.
discard 30e0187736 gnu: r-useful: Update to 1.2.7.
discard cc0f23de27 gnu: r-pls: Update to 2.9-0.
discard 94780c48f5 gnu: r-caliberrfimpute: Update to 1.0-8.
discard c43b4a607f gnu: r-snowflakeauth: Update to 0.2.2.
discard 830cf8c741 gnu: r-sn: Update to 2.1.3.
discard ee91a864ba gnu: r-ggalluvial: Update to 0.12.6.
discard 073416c380 gnu: r-ggiraph: Update to 0.9.6.
discard 5fa4d41f36 gnu: r-ggrepel: Update to 0.9.7.
discard e70fb48268 gnu: r-vcfr: Update to 1.16.0.
discard 3ff01b3e83 gnu: r-dbi: Update to 1.3.0.
discard e1cf298fc2 gnu: r-smoof: Update to 1.7.0.
discard 82cc053290 gnu: r-argparser: Update to 0.7.3.
discard 058b402df7 gnu: python-pytorch-for-r-torch: Use python-build-system.
discard cae98e598c gnu: r-iotools: Update to 0.4-0.
discard 1900ad7760 gnu: r-fauxpas: Update to 0.6.0.
discard eb776f869c gnu: r-paws-common: Update to 0.8.9.
discard 80503d89c2 gnu: r-mlr3: Update to 1.4.0.
discard a11ccf2242 gnu: r-mlr3misc: Update to 0.20.0.
discard b01951b280 gnu: r-lobstr: Update to 1.2.0.
discard 7e7a66ad22 gnu: r-rselenium: Update to 1.7.10.
discard 969ee1ba1e gnu: r-ada: Update to 2.0-5.1.
discard f789c318a9 gnu: r-clue: Update to 0.3-67.
discard e8bc2220d7 gnu: r-gridtext: Update to 0.1.6.
discard c47ce7924f gnu: r-mlbench: Update to 2.1-7.
discard 518cc72c26 gnu: r-rms: Update to 8.1-1.
discard c55f385dac gnu: r-future-apply: Update to 1.20.2.
discard 56a47e84a9 gnu: r-huge: Update to 1.4.
discard 3cae9e8593 gnu: r-tm: Update to 0.7-18.
discard 0308f1abfc gnu: r-fmesher: Update to 0.7.0.
discard 0643c9ff5e gnu: r-ncmisc: Update to 1.3.1.
discard 5035ba35c6 gnu: r-dofuture: Update to 1.2.1.
discard 334ee2f6fc gnu: r-tseries: Update to 0.10-60.
discard 53e5dce11d gnu: r-laplacesdemon: Update to 16.1.8.
discard e9c9ed6534 gnu: r-relations: Update to 0.6-16.
discard acd88b79ea gnu: r-gap: Update to 1.14.
discard a4000a805c gnu: r-readr: Update to 2.2.0.
discard 52a7b86e09 gnu: r-fuzzyjoin: Update to 0.1.8.
discard beca05e695 gnu: r-effects: Update to 4.2-5.
discard a6a88c9bf5 gnu: r-ggiraph: Update to 0.9.5.
discard 9613ab0ab2 gnu: r-flare: Update to 1.8.
discard 68e3210fd6 gnu: r-bb: Update to 2026.1.0.
discard 232d2f28f2 gnu: r-ecosolver: Update to 0.6.1.
discard 6843074d67 gnu: r-voltron: Replace custom phase with #:skipped-tests.
discard 62d126f757 gnu: r-caretensemble: Replace custom phase with
#:skipped-tests.
discard ad56cdb019 gnu: r-lightgbm: Replace custom phase with #:skipped-tests.
discard a16075b95f gnu: r-rvenn: Replace custom phase with #:skipped-tests.
discard 973e2df58c gnu: r-mosaic: Replace custom phase with #:skipped-tests.
discard ae2ea1283e gnu: r-rsconnect: Replace custom phase with #:skipped-tests.
discard 2cd754011a gnu: r-phangorn: Replace custom phase with #:skipped-tests.
discard 78272ae23f gnu: r-latex2exp: Replace custom phase with #:skipped-tests.
discard 71466c0178 gnu: r-glmmtmb: Replace custom phase with #:skipped-tests.
discard a718621740 gnu: r-options: Replace custom phase with #:skipped-tests.
discard 48574b8c50 gnu: r-seqminer: Replace custom phase with #:skipped-tests.
discard f03251a733 gnu: r-seqminer: Add missing inputs.
discard cb4855423e gnu: r-arrow: Replace custom phase with #:skipped-tests.
discard 3ec7f54853 gnu: r-proxyc: Replace custom phase with #:skipped-tests.
discard d4ddd17d17 gnu: r-bedr: Replace custom phase with #:skipped-tests.
discard 90bf37f8f5 gnu: r-data-tree: Replace custom phase with #:skipped-tests.
discard 33ffd2acb6 gnu: r-bindr: Replace custom phase with #:skipped-tests.
discard 32d28ae44c gnu: r-flextable: Replace custom phase with #:skipped-tests.
discard 0aa51c5d10 gnu: r-lintr: Replace custom phase with #:skipped-tests.
discard f77aace3e2 gnu: r-workflows: Replace custom phase with #:skipped-tests.
discard dca8e93732 gnu: r-mi: Enable all tests.
discard 15728dc382 gnu: r-rstpm2: Enable all tests.
discard 990846339d gnu: r-trycatchlog: Replace custom phase with
#:skipped-tests.
discard 5229884e16 gnu: r-bslib: Replace custom phase with #:skipped-tests.
discard a376ada138 gnu: r-datawizard: Replace custom phase with
#:skipped-tests.
discard 8f4326326a gnu: r-ggdist: Replace custom phase with #:skipped-tests.
discard b8cc61f754 gnu: r-tailor: Replace custom phase with #:skipped-tests.
discard a13518331c gnu: r-vcr: Replace custom phase with #:skipped-tests.
discard 4615a9ee07 gnu: r-readr: Replace custom phase with #:skipped-tests.
discard 9b4c08f5a6 gnu: r-gfonts: Replace custom phase with #:skipped-tests.
discard 6652e938a8 gnu: r-cutpointr: Replace custom phase with #:skipped-tests.
discard 84df1214f7 gnu: r-httr2: Replace custom phase with #:skipped-tests.
discard 4528901c98 build-system/r: Add build phase to skip tests.
discard 6d0bf2f334 gnu: r-biomart: Update to 2.66.1.
discard 15a5941da4 gnu: r-animalcules: Update to 1.26.1.
discard 68b20f78fd import/cran: Uniquify inputs.
discard 202d8b5050 import/cran: Use sets instead of lset-union.
discard 0e70d64dac gnu: r-cytoml: Update list of ignored native inputs.
discard 20217c41e2 import/cran: Fix import of packages in single quotes.
discard fd57fb8471 gnu: r-tsne: Move to (gnu packages cran).
discard d30aa0acbf gnu: r-trimcluster: Move to (gnu packages cran).
discard 48c7db1c76 gnu: r-tmvnsim: Move to (gnu packages cran).
discard c90652d92b gnu: r-tidyselect: Move to (gnu packages cran).
discard b1f3d02b9a gnu: r-tidyr: Move to (gnu packages cran).
discard dcf69ccc16 gnu: r-tibble: Move to (gnu packages cran).
discard d9a3b70ba5 gnu: r-testthat: Move to (gnu packages cran).
discard ad165c25b3 gnu: r-tclust: Move to (gnu packages cran).
discard 292c75572b gnu: r-synchronicity: Move to (gnu packages cran).
discard 0a7bedaaad gnu: r-statmod: Move to (gnu packages cran).
discard 359bd9fe77 gnu: r-sparsem: Move to (gnu packages cran).
discard 79644741b2 gnu: r-sourcetools: Move to (gnu packages cran).
discard 8ba6b15699 gnu: r-snow: Move to (gnu packages cran).
discard 7e99fb5a5b gnu: r-sn: Move to (gnu packages cran).
discard 52ac0b243e gnu: r-simr: Move to (gnu packages cran).
discard fab7231be9 gnu: r-sfsmisc: Move to (gnu packages cran).
discard 4bc7c81c58 gnu: r-segmented: Move to (gnu packages cran).
discard 5d196b264d gnu: r-vpc: Move to (gnu packages cran).
discard b8322a54e0 gnu: r-rversions: Move to (gnu packages cran).
discard 5e72156efe gnu: r-runit: Move to (gnu packages cran).
discard 8092c2d2be gnu: r-rtsne: Move to (gnu packages cran).
discard 7eadbb63ef gnu: r-rstudioapi: Move to (gnu packages cran).
discard a9104f3d65 gnu: r-rsqlite: Move to (gnu packages cran).
discard ff480030af gnu: r-rrcov: Move to (gnu packages cran).
discard 2132b13cd8 gnu: r-rprojroot: Move to (gnu packages cran).
discard a5f4c6a085 gnu: r-roxygen2: Move to (gnu packages cran).
discard 658ffed3ff gnu: r-rocr: Move to (gnu packages cran).
discard 1397725bc8 gnu: r-robustbase: Move to (gnu packages cran).
discard 8877ee447d gnu: r-robust: Move to (gnu packages cran).
discard 5fd5272878 gnu: r-rngtools: Move to (gnu packages cran).
discard 93862c686e gnu: r-rmarkdown: Move to (gnu packages cran).
discard 017c885f56 gnu: r-rlrsim: Move to (gnu packages cran).
discard bf5a395106 gnu: r-rlang: Move to (gnu packages cran).
discard 24d124acc4 gnu: r-rematch: Move to (gnu packages cran).
discard 3917542bbb gnu: r-registry: Move to (gnu packages cran).
discard 1c0c88902d gnu: r-reghelper: Move to (gnu packages cran).
discard 07c39e4704 gnu: r-readr: Move to (gnu packages cran).
discard c7a4ab27a5 gnu: r-rcurl: Move to (gnu packages cran).
discard d4e1229d4f gnu: r-rcppprogress: Move to (gnu packages cran).
discard 63b14f33ec gnu: r-rcppeigen: Move to (gnu packages cran).
discard 5134880282 gnu: r-rcpparmadillo: Move to (gnu packages cran).
discard 17cca82a61 gnu: r-r-utils: Move to (gnu packages cran).
discard 45d4fb9bb7 gnu: r-r-rsp: Move to (gnu packages cran).
discard 4fa6239f33 gnu: r-r-methodss3: Move to (gnu packages cran).
discard ea01592916 gnu: r-r-oo: Move to (gnu packages cran).
discard 5b86492b5b gnu: r-r-cache: Move to (gnu packages cran).
discard ca42bd95fb gnu: r-rann: Move to (gnu packages cran).
discard 59017d3d78 gnu: r-ranger: Move to (gnu packages cran).
discard 855145a1ed gnu: r-randomforest: Move to (gnu packages cran).
discard c20fbe2ecc gnu: r-rcolorbrewer: Move to (gnu packages cran).
discard 632e76b03c gnu: r-ez: Update to 4.5-0.
discard 724dac21fe gnu: r-unigd: Update to 0.2.0.
discard 507ae2080e gnu: r-tweedie: Update to 3.0.14.
discard a3f351c446 gnu: r-multcompview: Update to 0.1-11.
discard a4a650d918 gnu: r-stable: Update to 1.1.7.
discard 8cc28c348a gnu: r-rpostgres: Update to 1.4.10.
discard e9b646729b gnu: r-msnid: Update to 1.44.2.
discard 85511754a1 gnu: r-nebulosa: Update to 1.20.1.
discard 0779c31a48 gnu: r-forecast: Update to 9.0.1.
discard 7f4b06d668 gnu: r-gstat: Update to 2.1-5.
discard 6d89dad00b gnu: r-randomforestsrc: Update to 3.5.1.
discard 4e059f22bd gnu: r-stars: Update to 0.7-1.
discard e727925259 gnu: r-vdiffr: Update to 1.0.9.
discard ebb758e3fc gnu: r-igraph: Update to 2.2.2.
discard f243b28805 gnu: r-nanoarrow: Update to 0.8.0.
discard 8cfc4d0627 gnu: r-semplot: Update to 1.1.8.
discard 32cc58e9d9 gnu: r-semtools: Update to 0.5-8.
discard bb620e8301 gnu: r-fillpattern: Update to 1.0.3.
discard e69ebcb32e gnu: r-xgboost: Update to 3.2.0.1.
discard 56baa98fca gnu: r-xml: Update to 3.99-0.22.
discard 72624a26a5 gnu: r-ggvis: Update to 0.4.10.
discard 1d0e0f60d3 gnu: r-haplo-stats: Update to 1.9.8.2.
discard 8644a9abe7 gnu: r-spdep: Update to 1.4-2.
discard 7bf35f21fd gnu: r-targets: Update to 1.12.0.
discard 0ac9f8f88f gnu: r-tarchetypes: Update to 0.14.0.
discard 6e4845e342 gnu: r-flextable: Update to 0.9.11.
discard 0f1784ea4b gnu: r-reticulate: Update to 1.45.0.
discard ab43f413f1 gnu: r-later: Update to 1.4.6.
discard 38a184ebff gnu: r-simdesign: Update to 2.23.
discard 25394f3ae5 gnu: r-np: Update to 0.60-20.
discard e8ff01e691 gnu: r-trust: Update to 0.1-9.
discard 247e8bd1a8 gnu: r-psychotools: Update to 0.7-6.
discard 85b455c2d4 gnu: r-lpsolveapi: Update to 5.5.2.0-17.15.
discard 9b4ef67a0d gnu: r-sp: Update to 2.2-1.
discard ddf5d126b0 gnu: r-rcppspdlog: Update to 0.0.27.
discard e17123a707 gnu: r-httr: Update to 1.4.8.
discard 685a08f823 gnu: r-mirai: Update to 2.6.0.
discard 28f60c462e gnu: r-marginaleffects: Update to 0.32.0.
discard 596cfc199a gnu: r-plotrix: Update to 3.8-14.
discard 2f7df38d4d gnu: r-dbplyr: Update to 2.5.2.
discard c031de6155 gnu: r-model4you: Update to 0.9-9.
discard 355e858da1 gnu: r-ggpicrust2: Update to 2.5.10.
discard 34bf8f1601 gnu: r-dunn-test: Update to 1.3.7.
add 0c748bee76 gnu: libspatialindex: Update to 2.0.0 and enable tests.
add 425329b1bf gnu: texinfo-7: Update to 7.3.
add 47e9d1d6cd gnu: guile-cv: Regenerate autotools files.
add 71dc089411 gnu: cross-binutils: make windres find gcc for mingw.
add 2bd0ba7226 gnu: Export non-trivial packages that were private.
add 22ae76cfce services: mollysocket: Fix mollysocket configuration.
add 53306de04b gnu: rust-xremap: Fix broken build.
add d2170de523 teams: Add music.scm to audio team.
add e29c17a2e7 gnu: hyprland: Update to 0.54.1.
add a375202ad3 gnu: libvirt: Configure default libvirt network.
add 08a5d6587f services: plasma-desktop: Cleanup plasma-dbus-service.
add 4de544fb61 services: plasma-desktop: Cleanup plasma-polkit-settings.
add af40849dd1 gnu: plasma: Add missing inputs.
add a31ac4846c services: plasma-desktop: Enable fwupd.
add a6e48bf329 bootloader: grub: Always use rumpdisk-style root for the
64-bit Hurd.
add 7ab0ba4352 gnu: iverilog: Update to 13_0.
add 5d4c6b3e26 gnu: Add emacs-conflict-buttons.
add 84f853aaab gnu: yosys: Split doc output.
add 3922ef808a gnu: libssh: Disable parallel tests.
add 1d54648833 gnu: plasma: Cleanup propagated-inputs.
add 0273d9ba8b gnu: calindori: Update to 25.12.2.
add 23b4706dd1 gnu: Add qtvirtualkeyboard.
add 08b9003d4c gnu: Add marknote.
add 714c59c232 gnu: Add plasma-thunderbolt.
add 9ccabc9bbf gnu: plasma: Add bolt and plasma-thunderbolt to
propagated-inputs.
add 870cf89d0f services: plasma-desktop: Enable plasma-thunderbolt.
add efa87aa4a9 gnu: qtvirtualkeyboard: Fix description.
add 6b94452c24 teams: Add folaht to documentation team.
add e66f8bf3ce gnu: taskwarrior: Update to 3.4.2.
add 8afd7d3150 teams: Use full name for member folaht.
add 0ad7fdb39a gnu: Add skladnik.
add eba98992d3 gnu: kde-games: Add skladnik to propagated-inputs.
add a14cfea4d3 gnu: asciinema: Update to 3.1.0.
add 4b2ba9592e gnu: asciinema: Install shell completions and manpages.
add 9a6abcb713 gnu: qgit: Update to 2.13.
add b454745797 gnu: swww: Improve style.
add 13346ec997 gnu: swww: Update to 0.11.2.
add f86ff1db98 gnu: Pin old pybind11 version.
add 8cd644f897 gnu: Add pybind11.
add d5515b13e4 gnu: Add kak-tree-sitter.
add 8a57f9a7a9 gnu: rust-crates: Adjust indentation.
add 08ca724ee3 gnu: Add ncspot.
add 5b6a2296ca gnu: Add dicedb-cli.
add cba3a8e976 gnu: wpa-supplicant: Update to 2.11.
add 29befe8bd6 gnu: fcft: Update to 3.3.3
add 420563fd20 gnu: foot: Update to 1.26.0
add dd26a9bd77 gnu: python-pyee: Update to 13.0.1.
add 0293594e2d gnu: python-apscheduler: Update to 3.11.2.
add 7b64f7293c gnu: python-telethon: Update to 1.42.0.
add fa6b2624d7 gnu: guile-wayland-scm-socket: Update to 0.0.1.
add bd3dd15edc gnu: guile-wayland-scm-shm: Update to 0.0.1.
add e22d78cb9d gnu: guile-wayland-scm: Update to 0.0.1.
add 3765eb786c gnu: vis: Fix Lua paths.
add 6d12f058a1 gnu: sbcl-trucler: Update to 0.0.0-2.39d4ba1.
add a92c6fb4f5 gnu: ecl-trucler: Disable tests.
add 53bb5afabe gnu: sbcl-ctype: Update to 0.0.0-5.d9a7727.
add 2126b510ce gnu: Remove linux-libre 5.4.
add b2883abb0d gnu: linux-libre-lts: Update to 6.18.
add 9b29632ec4 gnu: linux-libre 6.19: Update to 6.19.5.
add 42d0544018 gnu: linux-libre 6.18: Update to 6.18.15.
add dda7aabfe7 gnu: ruby-google-protobuf: Update to 4.34.0.rc.2.
add 82cf87a176 gnu: yosys: Enable python bindings.
add 4c9e710517 gnu: emacs-dirvish: Use absolute paths for external preview
programs.
add 929d7f6a82 gnu: Add emacs-modus-catppuccin-themes.
new b6dd75fbdd gnu: r-dunn-test: Update to 1.3.7.
new 8675624aa7 gnu: r-ggpicrust2: Update to 2.5.10.
new 2e9ea38e5e gnu: r-model4you: Update to 0.9-9.
new 59503f1923 gnu: r-dbplyr: Update to 2.5.2.
new 01775bb921 gnu: r-plotrix: Update to 3.8-14.
new adb7dbeb55 gnu: r-marginaleffects: Update to 0.32.0.
new 8125449246 gnu: r-mirai: Update to 2.6.0.
new f51f8f7897 gnu: r-httr: Update to 1.4.8.
new bb2f089f00 gnu: r-rcppspdlog: Update to 0.0.27.
new bb80123fcf gnu: r-sp: Update to 2.2-1.
new 4729a08265 gnu: r-lpsolveapi: Update to 5.5.2.0-17.15.
new 625da277bb gnu: r-psychotools: Update to 0.7-6.
new a485692315 gnu: r-trust: Update to 0.1-9.
new 3144c3195d gnu: r-np: Update to 0.60-20.
new acedbcac17 gnu: r-simdesign: Update to 2.23.
new ff17f0a8c4 gnu: r-later: Update to 1.4.6.
new 4b16b6118f gnu: r-reticulate: Update to 1.45.0.
new 89390939f6 gnu: r-flextable: Update to 0.9.11.
new fe9ae9a339 gnu: r-tarchetypes: Update to 0.14.0.
new 0c53b12216 gnu: r-targets: Update to 1.12.0.
new 32ab2ae09d gnu: r-spdep: Update to 1.4-2.
new 8382273f3c gnu: r-haplo-stats: Update to 1.9.8.2.
new 6b6da1243a gnu: r-ggvis: Update to 0.4.10.
new 02f7a73308 gnu: r-xml: Update to 3.99-0.22.
new d8bb0705d8 gnu: r-xgboost: Update to 3.2.0.1.
new 63bf267e05 gnu: r-fillpattern: Update to 1.0.3.
new e967dc430b gnu: r-semtools: Update to 0.5-8.
new 87877dfc5c gnu: r-semplot: Update to 1.1.8.
new bcd7f7c67e gnu: r-nanoarrow: Update to 0.8.0.
new 525c8a2e88 gnu: r-igraph: Update to 2.2.2.
new 23251725df gnu: r-vdiffr: Update to 1.0.9.
new e1f4307091 gnu: r-stars: Update to 0.7-1.
new e0e6a8cc40 gnu: r-randomforestsrc: Update to 3.5.1.
new e51503c7bf gnu: r-gstat: Update to 2.1-5.
new 06e4090b2e gnu: r-forecast: Update to 9.0.1.
new fafefa4437 gnu: r-nebulosa: Update to 1.20.1.
new 2df609a804 gnu: r-msnid: Update to 1.44.2.
new ad0cf838b4 gnu: r-rpostgres: Update to 1.4.10.
new 4f72f3cba3 gnu: r-stable: Update to 1.1.7.
new 7d09a40aea gnu: r-multcompview: Update to 0.1-11.
new 39f3ed02a8 gnu: r-tweedie: Update to 3.0.14.
new 7439eac289 gnu: r-unigd: Update to 0.2.0.
new bbe85f7f2c gnu: r-ez: Update to 4.5-0.
new 9db7b062c7 gnu: r-rcolorbrewer: Move to (gnu packages cran).
new e8fd441bb9 gnu: r-randomforest: Move to (gnu packages cran).
new 620ea66d19 gnu: r-ranger: Move to (gnu packages cran).
new 901e355d67 gnu: r-rann: Move to (gnu packages cran).
new 56511440d8 gnu: r-r-cache: Move to (gnu packages cran).
new b58a9c9837 gnu: r-r-oo: Move to (gnu packages cran).
new 4e3aca16bf gnu: r-r-methodss3: Move to (gnu packages cran).
new 34776bee0f gnu: r-r-rsp: Move to (gnu packages cran).
new b13fe37162 gnu: r-r-utils: Move to (gnu packages cran).
new 8e82a1eb78 gnu: r-rcpparmadillo: Move to (gnu packages cran).
new 5a4a1377c6 gnu: r-rcppeigen: Move to (gnu packages cran).
new 2d562aacf7 gnu: r-rcppprogress: Move to (gnu packages cran).
new 54daeead63 gnu: r-rcurl: Move to (gnu packages cran).
new 4c20b27009 gnu: r-readr: Move to (gnu packages cran).
new d6663427e7 gnu: r-reghelper: Move to (gnu packages cran).
new d79c413754 gnu: r-registry: Move to (gnu packages cran).
new f37668f83c gnu: r-rematch: Move to (gnu packages cran).
new 79a6f2c93a gnu: r-rlang: Move to (gnu packages cran).
new 3fe2287e20 gnu: r-rlrsim: Move to (gnu packages cran).
new 2e5efe079e gnu: r-rmarkdown: Move to (gnu packages cran).
new dd819a7087 gnu: r-rngtools: Move to (gnu packages cran).
new 317e852693 gnu: r-robust: Move to (gnu packages cran).
new 8dbb431e9f gnu: r-robustbase: Move to (gnu packages cran).
new 58edf06cd7 gnu: r-rocr: Move to (gnu packages cran).
new 378edec783 gnu: r-roxygen2: Move to (gnu packages cran).
new 386cad3dce gnu: r-rprojroot: Move to (gnu packages cran).
new f2bd16f4e5 gnu: r-rrcov: Move to (gnu packages cran).
new d9f8129794 gnu: r-rsqlite: Move to (gnu packages cran).
new b27fcd0a77 gnu: r-rstudioapi: Move to (gnu packages cran).
new 606dc0ea79 gnu: r-rtsne: Move to (gnu packages cran).
new 6a0f2b511a gnu: r-runit: Move to (gnu packages cran).
new efd359e743 gnu: r-rversions: Move to (gnu packages cran).
new 80d5ec328c gnu: r-vpc: Move to (gnu packages cran).
new 047cb9d7e3 gnu: r-segmented: Move to (gnu packages cran).
new f0b2a1c732 gnu: r-sfsmisc: Move to (gnu packages cran).
new b99d94c623 gnu: r-simr: Move to (gnu packages cran).
new ab74ebdc84 gnu: r-sn: Move to (gnu packages cran).
new 1f1228a7d4 gnu: r-snow: Move to (gnu packages cran).
new 2948a47cee gnu: r-sourcetools: Move to (gnu packages cran).
new 415c5daada gnu: r-sparsem: Move to (gnu packages cran).
new de99c83913 gnu: r-statmod: Move to (gnu packages cran).
new 2daf9b6c4b gnu: r-synchronicity: Move to (gnu packages cran).
new 989a8f060f gnu: r-tclust: Move to (gnu packages cran).
new 4db0b98c68 gnu: r-testthat: Move to (gnu packages cran).
new 0fc5e5dc52 gnu: r-tibble: Move to (gnu packages cran).
new 52fb696f40 gnu: r-tidyr: Move to (gnu packages cran).
new 82b1ce3533 gnu: r-tidyselect: Move to (gnu packages cran).
new f708058d4d gnu: r-tmvnsim: Move to (gnu packages cran).
new 2fbd8fbd2a gnu: r-trimcluster: Move to (gnu packages cran).
new 1ee716fef1 gnu: r-tsne: Move to (gnu packages cran).
new c6c4e99f2c import/cran: Fix import of packages in single quotes.
new 46797406b8 gnu: r-cytoml: Update list of ignored native inputs.
new ca1eeae8aa import/cran: Use sets instead of lset-union.
new f89033cc05 import/cran: Uniquify inputs.
new ad33762467 gnu: r-animalcules: Update to 1.26.1.
new 2c9b2b7bee gnu: r-biomart: Update to 2.66.1.
new 1c0201a1b9 build-system/r: Add build phase to skip tests.
new 38c448743f gnu: r-httr2: Replace custom phase with #:skipped-tests.
new f7eae75551 gnu: r-cutpointr: Replace custom phase with #:skipped-tests.
new ab4b3a84a9 gnu: r-gfonts: Replace custom phase with #:skipped-tests.
new 453c229edb gnu: r-readr: Replace custom phase with #:skipped-tests.
new bff4b9d78c gnu: r-vcr: Replace custom phase with #:skipped-tests.
new c639a0ca3f gnu: r-tailor: Replace custom phase with #:skipped-tests.
new 953b1aed6f gnu: r-ggdist: Replace custom phase with #:skipped-tests.
new f76513d094 gnu: r-datawizard: Replace custom phase with
#:skipped-tests.
new 59fe9a3086 gnu: r-bslib: Replace custom phase with #:skipped-tests.
new cd4d78a63c gnu: r-trycatchlog: Replace custom phase with
#:skipped-tests.
new f9bad9886b gnu: r-rstpm2: Enable all tests.
new 83ccef90a7 gnu: r-mi: Enable all tests.
new 1587d2a811 gnu: r-workflows: Replace custom phase with #:skipped-tests.
new 998b73c406 gnu: r-lintr: Replace custom phase with #:skipped-tests.
new 69e80dc3e8 gnu: r-flextable: Replace custom phase with #:skipped-tests.
new 1456e48c60 gnu: r-bindr: Replace custom phase with #:skipped-tests.
new 01009ab209 gnu: r-data-tree: Replace custom phase with #:skipped-tests.
new 3a975fe15f gnu: r-bedr: Replace custom phase with #:skipped-tests.
new ebfe1cbfbf gnu: r-proxyc: Replace custom phase with #:skipped-tests.
new 8b11c24fe1 gnu: r-arrow: Replace custom phase with #:skipped-tests.
new b8b6323ddd gnu: r-seqminer: Add missing inputs.
new a4fc399ea8 gnu: r-seqminer: Replace custom phase with #:skipped-tests.
new e26bd62cad gnu: r-options: Replace custom phase with #:skipped-tests.
new 4665b0a9d1 gnu: r-glmmtmb: Replace custom phase with #:skipped-tests.
new 68482a01e0 gnu: r-latex2exp: Replace custom phase with #:skipped-tests.
new 2e708fdbd0 gnu: r-phangorn: Replace custom phase with #:skipped-tests.
new 05af8e8473 gnu: r-rsconnect: Replace custom phase with #:skipped-tests.
new d6ab85e812 gnu: r-mosaic: Replace custom phase with #:skipped-tests.
new f44ca77753 gnu: r-rvenn: Replace custom phase with #:skipped-tests.
new 0756023b96 gnu: r-lightgbm: Replace custom phase with #:skipped-tests.
new c9e0e47fb9 gnu: r-caretensemble: Replace custom phase with
#:skipped-tests.
new 4199f9b5f5 gnu: r-voltron: Replace custom phase with #:skipped-tests.
new 9bc03aeaf7 gnu: r-ecosolver: Update to 0.6.1.
new b2c9bc08b7 gnu: r-bb: Update to 2026.1.0.
new 037364a512 gnu: r-flare: Update to 1.8.
new a8e6bd1a0c gnu: r-ggiraph: Update to 0.9.5.
new 365eb91850 gnu: r-effects: Update to 4.2-5.
new 0b9db77f76 gnu: r-fuzzyjoin: Update to 0.1.8.
new 81d04da408 gnu: r-readr: Update to 2.2.0.
new f423434447 gnu: r-gap: Update to 1.14.
new bc973549a2 gnu: r-relations: Update to 0.6-16.
new 368a679e4b gnu: r-laplacesdemon: Update to 16.1.8.
new c36b0f808a gnu: r-tseries: Update to 0.10-60.
new c3a46ac6f9 gnu: r-dofuture: Update to 1.2.1.
new 90a91df4ea gnu: r-ncmisc: Update to 1.3.1.
new 3d857d39d1 gnu: r-fmesher: Update to 0.7.0.
new 8dffa5c50d gnu: r-tm: Update to 0.7-18.
new 5119170b9e gnu: r-huge: Update to 1.4.
new 23b8483162 gnu: r-future-apply: Update to 1.20.2.
new f5eb74ce7e gnu: r-rms: Update to 8.1-1.
new 4a934baddc gnu: r-mlbench: Update to 2.1-7.
new c131e341f0 gnu: r-gridtext: Update to 0.1.6.
new acbe1976a9 gnu: r-clue: Update to 0.3-67.
new 0dc43c50c6 gnu: r-ada: Update to 2.0-5.1.
new 735262d8b0 gnu: r-rselenium: Update to 1.7.10.
new 0b8833eef7 gnu: r-lobstr: Update to 1.2.0.
new fff465fcc1 gnu: r-mlr3misc: Update to 0.20.0.
new 6eb8699147 gnu: r-mlr3: Update to 1.4.0.
new 337b0f009f gnu: r-paws-common: Update to 0.8.9.
new efb3dff446 gnu: r-fauxpas: Update to 0.6.0.
new e8e132df1b gnu: r-iotools: Update to 0.4-0.
new 5cca4a9c80 gnu: python-pytorch-for-r-torch: Use python-build-system.
new 16a8644825 gnu: r-argparser: Update to 0.7.3.
new 90367b6155 gnu: r-smoof: Update to 1.7.0.
new 3dfd4fb852 gnu: r-dbi: Update to 1.3.0.
new 7a9caee64a gnu: r-vcfr: Update to 1.16.0.
new 593082a1b3 gnu: r-ggrepel: Update to 0.9.7.
new 822667ba28 gnu: r-ggiraph: Update to 0.9.6.
new 1b7b1aa904 gnu: r-ggalluvial: Update to 0.12.6.
new 1963797ba1 gnu: r-sn: Update to 2.1.3.
new 8d34372a73 gnu: r-snowflakeauth: Update to 0.2.2.
new 035cd7fae9 gnu: r-caliberrfimpute: Update to 1.0-8.
new 6171927609 gnu: r-pls: Update to 2.9-0.
new 9dcf08851a gnu: r-useful: Update to 1.2.7.
new 4713ec524a gnu: r-ips: Update to 0.0.13.
new 8eea2bd847 gnu: r-scatterplot3d: Update to 0.3-45.
new 8cca7c8b2f gnu: r-raceid: Update to 0.4.0.
new 60c444e4d5 gnu: r-simdesign: Update to 2.24.
new 21bda86649 gnu: r-later: Update to 1.4.7.
new 75030ace1d gnu: r-ggpubr: Update to 0.6.3.
new a5f65a8cac gnu: r-survey: Update to 4.5.
new f165d4173f gnu: r-tweedie: Update to 3.0.16.
new 529449bb90 gnu: r-testit: Update to 0.16.
new 5d9ceab381 gnu: r-sf: Update to 1.1-0.
new 49041cf017 gnu: r-arrow: Update to 23.0.1.1.
new f3a1959d1d gnu: r-xtable: Update to 1.8-8.
new 045a81049b gnu: r-graphlayouts: Update to 1.2.3.
new 8ed2156ac6 gnu: r-actcd: Update to 1.4-0.
new 1f0b5712c7 gnu: r-univoutl: Update to 0.5.0.
new 9cdca4ea1f gnu: r-consrank: Update to 3.0.
new 974b718459 gnu: r-survminer: Update to 0.5.2.
new f39b8bdf7c gnu: r-seqminer: Update to 9.9.
new e06d02f42b gnu: r-mlr3viz: Update to 0.11.0.
new 27ade6ee7f gnu: r-eyelinker: Update to 0.2.2.
new 4ec311b27d gnu: apache-arrow: Update to 23.0.1.
new f2dcc494e8 gnu: r-survcomp: Update to 1.60.1.
new 881344fb70 gnu: r-illuminahumanmethylationepicv2anno-20a1-hg38: Update
to 1.0.1.
new a1e3ad086a gnu: r-illuminahumanmethylationepicv2manifest: Update to
1.0.1.
new 68ef0ffdae gnu: r-systempiperdata: Update to 2.14.5.
new e828e5becd gnu: r-gsva: Update to 2.4.5.
new 9b4413c572 gnu: r-mutationalpatterns: Update to 3.20.1.
new 4dd89f00dd gnu: r-scdblfinder: Update to 1.24.10.
new b3d11e2611 gnu: r-scran: Update to 1.38.1.
new fca5cd9144 gnu: r-countrycode: Update to 1.7.0.
new fe92f793aa gnu: r-openssl: Update to 2.3.5.
new 6627985646 gnu: r-rcppnumerical: Update to 0.7-0.
new d82c8b7770 gnu: r-rmumps: Update to 5.2.1-37.
new e745bcbf92 gnu: r-xts: Update to 0.14.2.
new 255f926654 gnu: r-magick: Update to 2.9.1.
new a3a53f94e8 gnu: r-tweedie: Update to 3.0.17.
new 8f76fcd0d2 gnu: r-emojifont: Update to 0.6.0.
new a247560820 gnu: r-tidypredict: Update to 1.1.0.
new 7398149f82 gnu: r-mlr3mbo: Update to 1.0.0.
new 0046712cf1 gnu: r-mlr3misc: Update to 0.21.0.
new 6b7ab611b5 gnu: r-mlr3: Update to 1.5.0.
new 25442cfe76 gnu: r-bbotk: Update to 1.9.0.
new ce91d082e9 gnu: r-antiword: Update to 1.3.5.
new 18a779fcbb gnu: r-aster: Disable vignettes.
new 2d834d0400 gnu: r-mlr3cluster: Disable one test.
new 39e5ea0293 gnu: Add r-msdatahub.
new 7540ccd920 gnu: Add r-scp.
new 5a8b48795a gnu: Add r-scpdata.
new 260eb2e8e5 gnu: Add r-numbers.
new 7cee2971d0 gnu: Add r-conf-design.
new f334628c12 gnu: Add r-doe-base.
new 04854dfd88 gnu: Add r-wrapr.
new a0067d1230 gnu: Add r-vtreat.
new c6c06ece9b gnu: Add r-smotefamily.
new 5830e2e509 gnu: r-mlr3cluster: Update to 0.3.0.
new d542148747 gnu: r-geosphere: Update to 1.6-5.
new 54a8c7d78e gnu: r-blackbox: Update to 1.1.54.
new e00ae30701 gnu: r-clarabel: Update to 0.11.2.
new fcb17a6a2d gnu: r-osqp: Update to 1.0.0.
new b1cc913d5e gnu: r-lhs: Update to 1.2.1.
new 46caa01889 gnu: r-mlrmbo: Update to 1.1.6.
new a7dcf48ef7 gnu: r-mlr3pipelines: Update to 0.11.0.
new 1b23a2fc04 gnu: r-gsva: Update to 2.4.6.
new 1a9928d022 gnu: r-phyloseq: Update to 1.54.1.
new 8778eea88e gnu: r-cvxr: Disable one test.
new 7afec8a652 gnu: r-rcppml/devel: Update to 0.5.6-3.2beac65.
new dde57b9abf gnu: r-singlet: Update to 0.99.8-1.ef4a374.
This update added new revisions after undoing existing revisions.
That is to say, some revisions that were in the old version of the
branch are not in the new version. This situation occurs
when a user --force pushes a change and generates a repository
containing something like this:
* -- * -- B -- O -- O -- O (cfa6456fe9)
\
N -- N -- N refs/heads/r-team (dde57b9abf)
You should already have received notification emails for all of the O
revisions, and so the following emails describe only the N revisions
from the common base, B.
Any revisions marked "omit" are not gone; other references still
refer to them. Any revisions marked "discard" are gone forever.
The 241 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
CODEOWNERS | 1 +
Makefile.am | 4 -
etc/teams.scm | 6 +
gnu/bootloader/grub.scm | 9 +-
gnu/local.mk | 4 +-
gnu/packages/admin.scm | 4 +-
gnu/packages/android.scm | 2 +-
gnu/packages/astronomy.scm | 6 +-
gnu/packages/aux-files/linux-libre/5.4-arm.conf | 9385 -----------------
gnu/packages/aux-files/linux-libre/5.4-arm64.conf | 9353 -----------------
gnu/packages/aux-files/linux-libre/5.4-i686.conf | 10321 -------------------
gnu/packages/aux-files/linux-libre/5.4-x86_64.conf | 10276 ------------------
gnu/packages/bioinformatics.scm | 10 +-
gnu/packages/chemistry.scm | 2 +-
gnu/packages/computer-architecture.scm | 2 +-
gnu/packages/cross-base.scm | 4 +-
gnu/packages/databases.scm | 38 +
gnu/packages/dlang.scm | 21 +-
gnu/packages/duckdb.scm | 2 +-
gnu/packages/electronics.scm | 27 +-
gnu/packages/emacs-xyz.scm | 83 +-
gnu/packages/engineering.scm | 2 +-
gnu/packages/fontutils.scm | 6 +-
gnu/packages/freedesktop.scm | 7 +-
gnu/packages/games.scm | 27 +-
gnu/packages/geo.scm | 7 +-
gnu/packages/gnucash.scm | 3 +-
gnu/packages/graphics.scm | 4 +-
gnu/packages/groovy.scm | 64 +-
gnu/packages/guile-xyz.scm | 15 +-
gnu/packages/haskell-xyz.scm | 69 +-
gnu/packages/haskell.scm | 6 +-
gnu/packages/image-processing.scm | 6 +-
gnu/packages/java-bootstrap.scm | 52 +-
gnu/packages/java-xml.scm | 10 +-
gnu/packages/java.scm | 44 +-
gnu/packages/kde-games.scm | 42 +-
gnu/packages/kde-office.scm | 48 +-
gnu/packages/kde-plasma.scm | 59 +-
gnu/packages/linux.scm | 87 +-
gnu/packages/lisp-xyz.scm | 23 +-
gnu/packages/machine-learning.scm | 26 +-
gnu/packages/maths.scm | 4 +-
gnu/packages/networking.scm | 2 +-
gnu/packages/opencl.scm | 2 +-
gnu/packages/package-management.scm | 2 +-
gnu/packages/patches/binutils-cross-windres.patch | 31 +
.../linux-libre-support-for-Pinebook-Pro.patch | 1135 --
.../patches/qgit-2.12-fix-search-style.patch | 23 -
...arrior-link-taskchampion-cpp-with-sqlite3.patch | 19 +
gnu/packages/physics.scm | 4 +-
gnu/packages/python-check.scm | 2 +-
gnu/packages/python-science.scm | 22 +-
gnu/packages/python-xyz.scm | 99 +-
gnu/packages/qt.scm | 49 +-
gnu/packages/radio.scm | 12 +-
gnu/packages/rails.scm | 10 +-
gnu/packages/ruby-check.scm | 7 +-
gnu/packages/ruby-xyz.scm | 50 +-
gnu/packages/rust-apps.scm | 38 +-
gnu/packages/rust-crates.scm | 2388 ++++-
gnu/packages/simulation.scm | 4 +-
gnu/packages/ssh.scm | 4 +
gnu/packages/statistics.scm | 4 +-
gnu/packages/syndication.scm | 2 +-
gnu/packages/task-management.scm | 55 +-
gnu/packages/terminals.scm | 39 +-
gnu/packages/texinfo.scm | 4 +-
gnu/packages/text-editors.scm | 31 +-
gnu/packages/version-control.scm | 8 +-
gnu/packages/vpn.scm | 55 -
gnu/packages/wm.scm | 74 +-
gnu/packages/xorg.scm | 5 +-
gnu/services/desktop.scm | 34 +-
gnu/services/messaging.scm | 6 +-
gnu/services/virtualization.scm | 16 +-
gnu/tests/base.scm | 4 -
gnu/tests/virtualization.scm | 20 +-
78 files changed, 3104 insertions(+), 41327 deletions(-)
delete mode 100644 gnu/packages/aux-files/linux-libre/5.4-arm.conf
delete mode 100644 gnu/packages/aux-files/linux-libre/5.4-arm64.conf
delete mode 100644 gnu/packages/aux-files/linux-libre/5.4-i686.conf
delete mode 100644 gnu/packages/aux-files/linux-libre/5.4-x86_64.conf
create mode 100644 gnu/packages/patches/binutils-cross-windres.patch
delete mode 100644
gnu/packages/patches/linux-libre-support-for-Pinebook-Pro.patch
delete mode 100644 gnu/packages/patches/qgit-2.12-fix-search-style.patch
create mode 100644
gnu/packages/patches/taskwarrior-link-taskchampion-cpp-with-sqlite3.patch
