guix_mirror_bot pushed a change to branch master
in repository guix.
from 7d6e9eebfe gnu: Add kalm.
new bad3b885da gnu: r-dunn-test: Update to 1.3.7.
new 174b346917 gnu: r-ggpicrust2: Update to 2.5.10.
new 14870186c2 gnu: r-model4you: Update to 0.9-9.
new 1397ce89e3 gnu: r-dbplyr: Update to 2.5.2.
new 09a1efc2e8 gnu: r-plotrix: Update to 3.8-14.
new 31b1ce5e00 gnu: r-marginaleffects: Update to 0.32.0.
new 883771c42a gnu: r-mirai: Update to 2.6.0.
new d6e601ca9e gnu: r-httr: Update to 1.4.8.
new c7e2a8959e gnu: r-rcppspdlog: Update to 0.0.27.
new 77879980e3 gnu: r-sp: Update to 2.2-1.
new 13b12803a3 gnu: r-lpsolveapi: Update to 5.5.2.0-17.15.
new 28b586691c gnu: r-psychotools: Update to 0.7-6.
new 1aa4b35d2f gnu: r-trust: Update to 0.1-9.
new 7bb02d7e2c gnu: r-np: Update to 0.60-20.
new 0d035e267d gnu: r-simdesign: Update to 2.23.
new 04b7a2545d gnu: r-later: Update to 1.4.6.
new f85836df40 gnu: r-reticulate: Update to 1.45.0.
new 80af9b6710 gnu: r-flextable: Update to 0.9.11.
new e6d32b8b5d gnu: r-tarchetypes: Update to 0.14.0.
new 7f57d0c538 gnu: r-targets: Update to 1.12.0.
new 741b4124db gnu: r-spdep: Update to 1.4-2.
new 8f415bbb14 gnu: r-haplo-stats: Update to 1.9.8.2.
new 4783f372dc gnu: r-ggvis: Update to 0.4.10.
new 7e7703982f gnu: r-xml: Update to 3.99-0.22.
new 48b623b4d7 gnu: r-xgboost: Update to 3.2.0.1.
new 58616381a8 gnu: r-fillpattern: Update to 1.0.3.
new f0ce7a92c1 gnu: r-semtools: Update to 0.5-8.
new f412461880 gnu: r-semplot: Update to 1.1.8.
new ef6bfd17c7 gnu: r-nanoarrow: Update to 0.8.0.
new c93f289b31 gnu: r-igraph: Update to 2.2.2.
new 05ed8067fc gnu: r-vdiffr: Update to 1.0.9.
new 4ef19afdc4 gnu: r-stars: Update to 0.7-1.
new 92bcc5b03d gnu: r-randomforestsrc: Update to 3.5.1.
new bc80b0dd9e gnu: r-gstat: Update to 2.1-5.
new 1bf583dd09 gnu: r-forecast: Update to 9.0.1.
new 8ee03aaf64 gnu: r-nebulosa: Update to 1.20.1.
new eabee0d297 gnu: r-msnid: Update to 1.44.2.
new 98f0003b1b gnu: r-rpostgres: Update to 1.4.10.
new 593256d4c0 gnu: r-stable: Update to 1.1.7.
new 175e5855a5 gnu: r-multcompview: Update to 0.1-11.
new 3b38c99613 gnu: r-tweedie: Update to 3.0.14.
new 0b7719e9f1 gnu: r-unigd: Update to 0.2.0.
new 399969f138 gnu: r-ez: Update to 4.5-0.
new 4240fb7d46 gnu: r-rcolorbrewer: Move to (gnu packages cran).
new ba96de82f8 gnu: r-randomforest: Move to (gnu packages cran).
new adac8c6934 gnu: r-ranger: Move to (gnu packages cran).
new 82177c7500 gnu: r-rann: Move to (gnu packages cran).
new 8b8d0a7550 gnu: r-r-cache: Move to (gnu packages cran).
new 3d8d52d23f gnu: r-r-oo: Move to (gnu packages cran).
new daab4a2229 gnu: r-r-methodss3: Move to (gnu packages cran).
new 40a3bbbf0d gnu: r-r-rsp: Move to (gnu packages cran).
new 35798dfef3 gnu: r-r-utils: Move to (gnu packages cran).
new 952d2905c1 gnu: r-rcpparmadillo: Move to (gnu packages cran).
new 7be144c8f2 gnu: r-rcppeigen: Move to (gnu packages cran).
new 65d6828c51 gnu: r-rcppprogress: Move to (gnu packages cran).
new 17848f9f50 gnu: r-rcurl: Move to (gnu packages cran).
new 95e6194508 gnu: r-readr: Move to (gnu packages cran).
new 122f7df92c gnu: r-reghelper: Move to (gnu packages cran).
new 51bce6f7c7 gnu: r-registry: Move to (gnu packages cran).
new 98ef04b635 gnu: r-rematch: Move to (gnu packages cran).
new 7f92fbe75c gnu: r-rlang: Move to (gnu packages cran).
new 1ca4675b5d gnu: r-rlrsim: Move to (gnu packages cran).
new 003bc33069 gnu: r-rmarkdown: Move to (gnu packages cran).
new 4134861df1 gnu: r-rngtools: Move to (gnu packages cran).
new 508104dc7a gnu: r-robust: Move to (gnu packages cran).
new 265cca0162 gnu: r-robustbase: Move to (gnu packages cran).
new 0118332069 gnu: r-rocr: Move to (gnu packages cran).
new 868c846d04 gnu: r-roxygen2: Move to (gnu packages cran).
new 0666e8f505 gnu: r-rprojroot: Move to (gnu packages cran).
new 7202bcddf2 gnu: r-rrcov: Move to (gnu packages cran).
new 30b2838df4 gnu: r-rsqlite: Move to (gnu packages cran).
new ef1fbeb61a gnu: r-rstudioapi: Move to (gnu packages cran).
new 559bc2611f gnu: r-rtsne: Move to (gnu packages cran).
new 45cffdc087 gnu: r-runit: Move to (gnu packages cran).
new deee09590e gnu: r-rversions: Move to (gnu packages cran).
new 728222ef7a gnu: r-vpc: Move to (gnu packages cran).
new 10eae73bc6 gnu: r-segmented: Move to (gnu packages cran).
new 461e3feaac gnu: r-sfsmisc: Move to (gnu packages cran).
new 873ab88f39 gnu: r-simr: Move to (gnu packages cran).
new f82a5e3a0c gnu: r-sn: Move to (gnu packages cran).
new de5988f5d4 gnu: r-snow: Move to (gnu packages cran).
new efea94fa45 gnu: r-sourcetools: Move to (gnu packages cran).
new 8861b359ed gnu: r-sparsem: Move to (gnu packages cran).
new 57d805506d gnu: r-statmod: Move to (gnu packages cran).
new 57e31e46c3 gnu: r-synchronicity: Move to (gnu packages cran).
new aab3612f8d gnu: r-tclust: Move to (gnu packages cran).
new 782f6f1fab gnu: r-testthat: Move to (gnu packages cran).
new b0ff234c69 gnu: r-tibble: Move to (gnu packages cran).
new 8662f4fbca gnu: r-tidyr: Move to (gnu packages cran).
new 2283d0f242 gnu: r-tidyselect: Move to (gnu packages cran).
new c9942b9c85 gnu: r-tmvnsim: Move to (gnu packages cran).
new 4ca3126412 gnu: r-trimcluster: Move to (gnu packages cran).
new c2a92688a9 gnu: r-tsne: Move to (gnu packages cran).
new ee0a9f27b9 import/cran: Fix import of packages in single quotes.
new 34df487128 gnu: r-cytoml: Update list of ignored native inputs.
new 647958d69a import/cran: Use sets instead of lset-union.
new d2c5f0fd59 import/cran: Uniquify inputs.
new 0a9c3f1338 gnu: r-animalcules: Update to 1.26.1.
new c87d544fab gnu: r-biomart: Update to 2.66.1.
new b89d732d11 build-system/r: Add build phase to skip tests.
new 2a9edf766c gnu: r-httr2: Replace custom phase with #:skipped-tests.
new 850f39a1a2 gnu: r-cutpointr: Replace custom phase with #:skipped-tests.
new ff26db7570 gnu: r-gfonts: Replace custom phase with #:skipped-tests.
new 820ebc0350 gnu: r-readr: Replace custom phase with #:skipped-tests.
new 4498ca3ad5 gnu: r-vcr: Replace custom phase with #:skipped-tests.
new 1550831eba gnu: r-tailor: Replace custom phase with #:skipped-tests.
new 63ede74078 gnu: r-ggdist: Replace custom phase with #:skipped-tests.
new 56e8a87a7b gnu: r-datawizard: Replace custom phase with
#:skipped-tests.
new 7399d58586 gnu: r-bslib: Replace custom phase with #:skipped-tests.
new 272395cd52 gnu: r-trycatchlog: Replace custom phase with
#:skipped-tests.
new c9acc88769 gnu: r-rstpm2: Enable all tests.
new 00200fdefc gnu: r-mi: Enable all tests.
new 0c7552f717 gnu: r-workflows: Replace custom phase with #:skipped-tests.
new 85289d3d7c gnu: r-lintr: Replace custom phase with #:skipped-tests.
new 82c6def8f5 gnu: r-flextable: Replace custom phase with #:skipped-tests.
new 5574c903f4 gnu: r-bindr: Replace custom phase with #:skipped-tests.
new aa23a17d10 gnu: r-data-tree: Replace custom phase with #:skipped-tests.
new a496f62ae0 gnu: r-bedr: Replace custom phase with #:skipped-tests.
new ec87bbbf69 gnu: r-proxyc: Replace custom phase with #:skipped-tests.
new 484f1efbdc gnu: r-arrow: Replace custom phase with #:skipped-tests.
new 5bb61ded37 gnu: r-seqminer: Add missing inputs.
new 785f3e5307 gnu: r-seqminer: Replace custom phase with #:skipped-tests.
new 74d0223f01 gnu: r-options: Replace custom phase with #:skipped-tests.
new b037d56288 gnu: r-glmmtmb: Replace custom phase with #:skipped-tests.
new 22b59fbb0e gnu: r-latex2exp: Replace custom phase with #:skipped-tests.
new 7c2abf053f gnu: r-phangorn: Replace custom phase with #:skipped-tests.
new 492ad617d2 gnu: r-rsconnect: Replace custom phase with #:skipped-tests.
new 308f1c1cb7 gnu: r-mosaic: Replace custom phase with #:skipped-tests.
new 764a5ee76b gnu: r-rvenn: Replace custom phase with #:skipped-tests.
new 9681cd9c7c gnu: r-lightgbm: Replace custom phase with #:skipped-tests.
new 90a69aefe0 gnu: r-caretensemble: Replace custom phase with
#:skipped-tests.
new 0741844d93 gnu: r-voltron: Replace custom phase with #:skipped-tests.
new 8422a6a819 gnu: r-ecosolver: Update to 0.6.1.
new 88866d490d gnu: r-bb: Update to 2026.1.0.
new ba6cc1c2fc gnu: r-flare: Update to 1.8.
new cc6460e9ef gnu: r-ggiraph: Update to 0.9.5.
new be7c94bcb3 gnu: r-effects: Update to 4.2-5.
new 96d16cd98f gnu: r-fuzzyjoin: Update to 0.1.8.
new 183a944fbb gnu: r-readr: Update to 2.2.0.
new 6bdfff7e9c gnu: r-gap: Update to 1.14.
new 48bba7023e gnu: r-relations: Update to 0.6-16.
new f5040f3fcc gnu: r-laplacesdemon: Update to 16.1.8.
new b54b08478a gnu: r-tseries: Update to 0.10-60.
new 634def0e6a gnu: r-dofuture: Update to 1.2.1.
new c7f537f956 gnu: r-ncmisc: Update to 1.3.1.
new d0332ac8a0 gnu: r-fmesher: Update to 0.7.0.
new 4f23cb8a5b gnu: r-tm: Update to 0.7-18.
new 1000d7c933 gnu: r-huge: Update to 1.4.
new af0768ec56 gnu: r-future-apply: Update to 1.20.2.
new dd8d702e8b gnu: r-rms: Update to 8.1-1.
new b347030c73 gnu: r-mlbench: Update to 2.1-7.
new 5f5b212ba4 gnu: r-gridtext: Update to 0.1.6.
new 75ffac3027 gnu: r-clue: Update to 0.3-67.
new 240b0f758c gnu: r-ada: Update to 2.0-5.1.
new da2292b1ae gnu: r-rselenium: Update to 1.7.10.
new 5af61f3b81 gnu: r-lobstr: Update to 1.2.0.
new ece79a9a15 gnu: r-mlr3misc: Update to 0.20.0.
new 6d4f233888 gnu: r-mlr3: Update to 1.4.0.
new 5078c8982e gnu: r-paws-common: Update to 0.8.9.
new 587b92ab43 gnu: r-fauxpas: Update to 0.6.0.
new a474a05a16 gnu: r-iotools: Update to 0.4-0.
new fe3b37f4ee gnu: python-pytorch-for-r-torch: Use python-build-system.
new 73552caf33 gnu: r-argparser: Update to 0.7.3.
new 83c182d01a gnu: r-smoof: Update to 1.7.0.
new af098c450d gnu: r-dbi: Update to 1.3.0.
new fc71085207 gnu: r-vcfr: Update to 1.16.0.
new 3c4a61e01a gnu: r-ggrepel: Update to 0.9.7.
new 10626ab706 gnu: r-ggiraph: Update to 0.9.6.
new 2e93de38df gnu: r-ggalluvial: Update to 0.12.6.
new 3cc00473d4 gnu: r-sn: Update to 2.1.3.
new a9d4a33ca7 gnu: r-snowflakeauth: Update to 0.2.2.
new 9a5904d107 gnu: r-caliberrfimpute: Update to 1.0-8.
new 254a1fa8a0 gnu: r-pls: Update to 2.9-0.
new 630dc64779 gnu: r-useful: Update to 1.2.7.
new 438298fe70 gnu: r-ips: Update to 0.0.13.
new 006931b7d1 gnu: r-scatterplot3d: Update to 0.3-45.
new 4a986edafb gnu: r-raceid: Update to 0.4.0.
new fccc16a8ca gnu: r-simdesign: Update to 2.24.
new 664cdfa867 gnu: r-later: Update to 1.4.7.
new 6410d6eedb gnu: r-ggpubr: Update to 0.6.3.
new 9c1409c6cf gnu: r-survey: Update to 4.5.
new e1d942c302 gnu: r-tweedie: Update to 3.0.16.
new 859e2a6702 gnu: r-testit: Update to 0.16.
new 3efb038254 gnu: r-sf: Update to 1.1-0.
new 48859d6578 gnu: r-arrow: Update to 23.0.1.1.
new ee1e0456f8 gnu: r-xtable: Update to 1.8-8.
new af22ab5465 gnu: r-graphlayouts: Update to 1.2.3.
new 8226504427 gnu: r-actcd: Update to 1.4-0.
new 3a82f24dbb gnu: r-univoutl: Update to 0.5.0.
new 2a222b9a06 gnu: r-consrank: Update to 3.0.
new ca6f3ce0ed gnu: r-survminer: Update to 0.5.2.
new f8f491eedc gnu: r-seqminer: Update to 9.9.
new ccd6830df7 gnu: r-mlr3viz: Update to 0.11.0.
new 6d21b264f8 gnu: r-eyelinker: Update to 0.2.2.
new 108eff6437 gnu: apache-arrow: Update to 23.0.1.
new 5022deef41 gnu: r-survcomp: Update to 1.60.1.
new 28c5a19bbf gnu: r-illuminahumanmethylationepicv2anno-20a1-hg38: Update
to 1.0.1.
new 2fcfbdf8fc gnu: r-illuminahumanmethylationepicv2manifest: Update to
1.0.1.
new f68c9af97e gnu: r-systempiperdata: Update to 2.14.5.
new a4d999679d gnu: r-gsva: Update to 2.4.5.
new 2c1330d185 gnu: r-mutationalpatterns: Update to 3.20.1.
new cb9cd82cda gnu: r-scdblfinder: Update to 1.24.10.
new 0bd81e3871 gnu: r-scran: Update to 1.38.1.
new 618c3ef6ce gnu: r-countrycode: Update to 1.7.0.
new b98e5688d0 gnu: r-openssl: Update to 2.3.5.
new bbb0d98023 gnu: r-rcppnumerical: Update to 0.7-0.
new 6a68f90cde gnu: r-rmumps: Update to 5.2.1-37.
new 03c49ae43b gnu: r-xts: Update to 0.14.2.
new 7324348ad4 gnu: r-magick: Update to 2.9.1.
new c8a52fdadf gnu: r-tweedie: Update to 3.0.17.
new 19173b61fa gnu: r-emojifont: Update to 0.6.0.
new c7fff0f04c gnu: r-tidypredict: Update to 1.1.0.
new 2d278cd633 gnu: r-mlr3mbo: Update to 1.0.0.
new ad3f600de7 gnu: r-mlr3misc: Update to 0.21.0.
new dec734b79c gnu: r-mlr3: Update to 1.5.0.
new ae42df5e95 gnu: r-bbotk: Update to 1.9.0.
new 5fa6a48f34 gnu: r-antiword: Update to 1.3.5.
new de3df4a1a0 gnu: r-aster: Disable vignettes.
new d2079b3643 gnu: r-mlr3cluster: Disable one test.
new eaab307c5c gnu: Add r-msdatahub.
new b63a857c57 gnu: Add r-scp.
new 39258e011e gnu: Add r-scpdata.
new 9d6313f064 gnu: Add r-numbers.
new bdb8bf0b91 gnu: Add r-conf-design.
new 385c3e0208 gnu: Add r-doe-base.
new 12598e0399 gnu: Add r-wrapr.
new ddadd8f3b5 gnu: Add r-vtreat.
new 884eab7f29 gnu: Add r-smotefamily.
new db2079e278 gnu: r-mlr3cluster: Update to 0.3.0.
new ce19272009 gnu: r-geosphere: Update to 1.6-5.
new ef55e9b373 gnu: r-blackbox: Update to 1.1.54.
new 3121530634 gnu: r-clarabel: Update to 0.11.2.
new b5ef92c126 gnu: r-osqp: Update to 1.0.0.
new 18d61976d7 gnu: r-lhs: Update to 1.2.1.
new ca6852fee8 gnu: r-mlrmbo: Update to 1.1.6.
new b5735cab88 gnu: r-mlr3pipelines: Update to 0.11.0.
new 55637c3886 gnu: r-gsva: Update to 2.4.6.
new 93cf0c54e3 gnu: r-phyloseq: Update to 1.54.1.
new b63649a69c gnu: r-cvxr: Disable one test.
new f3a42d40e0 gnu: r-rcppml/devel: Update to 0.5.6-3.2beac65.
new e994eb8b64 gnu: r-singlet: Update to 0.99.8-1.ef4a374.
The 241 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
gnu/packages/bioconductor.scm | 178 ++-
gnu/packages/bioinformatics.scm | 24 +-
gnu/packages/cran.scm | 2686 +++++++++++++++++++++++++++++--------
gnu/packages/databases.scm | 4 +-
gnu/packages/machine-learning.scm | 9 +-
gnu/packages/statistics.scm | 1608 ++--------------------
guix/build-system/r.scm | 6 +-
guix/build/r-build-system.scm | 34 +-
guix/import/cran.scm | 60 +-
tests/import/cran.scm | 7 +-
10 files changed, 2421 insertions(+), 2195 deletions(-)
