There was some discussion of this on the bio-packaging list re changes
in usage with Ricardo, but I think it breaks any dependent packages.
http://lists.open-bio.org/pipermail/bio-packaging/2015-July/000113.html
>From 3fd0b0c655c5f4f4317636f05d8242e2de9ae075 Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <[email protected]>
Date: Fri, 24 Jul 2015 23:11:31 +1000
Subject: [PATCH] gnu: bedtools: Update to 2.24.0.
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.24.0.
---
gnu/packages/bioinformatics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 78cd3ce..9cd661b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -148,7 +148,7 @@ computational cluster.")
(define-public bedtools
(package
(name "bedtools")
- (version "2.22.0")
+ (version "2.24.0")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/arq5x/bedtools2/archive/v"
@@ -156,7 +156,7 @@ computational cluster.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "16aq0w3dmbd0853j32xk9jin4vb6v6fgakfyvrsmsjizzbn3fpfl"))))
+ "0lnxrjvs3nnmb4bmskag1wg3h2hd80przz5q3xd0bvs7vyxrvpbl"))))
(build-system gnu-build-system)
(native-inputs `(("python" ,python-2)))
(inputs `(("samtools" ,samtools)
--
2.4.3