Ricardo Wurmus <[email protected]> skribis:
> From 6aa9c0cb97350d5cccb43a78e69e2b8887347df0 Mon Sep 17 00:00:00 2001
> From: Ricardo Wurmus <[email protected]>
> Date: Fri, 2 Oct 2015 16:37:03 +0200
> Subject: [PATCH] gnu: Add PePr.
>
> * gnu/packages/bioinformatics.scm (pepr): New variable.
[...]
> + (modify-phases %standard-phases
> + (add-after 'unpack 'disable-egg
> + (lambda _
> + (substitute* "setup.py"
> + (("from setuptools import setup")
> + "from distutils.core import setup"))
It would be nice if we had a bug ID or something to refer to this issue:
we don’t want to duplicate the explanation everywhere, yet it’d be nice
to have a pointer to the explanation. WDYT?
> + (description
> + "PePr is a ChIP-Seq peak calling or differential binding analysis tool
> +that is primarily designed for data with biological replicates. It uses a
> +negative binomial distribution to model the read counts among the samples in
> +the same group, and look for consistent differences between ChIP and control
> +group or two ChIP groups run under different conditions. PePr was published
> +on Bioinformatics on Jun 2014.")
I’d remove the last sentence.
Otherwise LGTM.
Thank you!
Ludo’.
