Ben Woodcroft <[email protected]> writes: > I tried doing the check for reproducibility > $ ./pre-inst-env guix build --rounds=3 snap-aligner > but it only built once. > > $ ./pre-inst-env guix build --check snap-aligner > ;;; note: source file /home/ben/git/guix/gnu/packages/bioinformatics.scm > ;;; newer than compiled > /home/ben/git/guix/gnu/packages/bioinformatics.go > guix build: error: build failed: unsupported build mode > > Did I mess that up?
Have you restarted the daemon? Is it the latest version of the daemon? It works for me after restarting the daemon. > +(define-public snap-aligner > + (package > + (name "snap-aligner") > + (version "1.0beta.18") > + (source (origin > + (method url-fetch) > + (uri (string-append > + "https://github.com/amplab/snap/archive/v"; > + version ".tar.gz")) > + (sha256 > + (base32 > + "1vnsjwv007k1fl1q7d681kbwn6bc66cgw6h16hym6gvyy71qv2ly")) > + (file-name (string-append name "-" version ".tar.gz")))) Nit pick: I think it’s nicer to have “file-name” right after the offending “uri” expression. > + (build-system gnu-build-system) > + (arguments > + '(#:phases > + (modify-phases %standard-phases > + (delete 'configure) > + (replace 'check (lambda _ (zero? (system* "./unit_tests")))) > + (replace 'install > + (lambda* (#:key outputs #:allow-other-keys) > + (let* ((out (assoc-ref outputs "out")) > + (bin (string-append out "/bin"))) > + (mkdir-p bin) > + (copy-file "snap-aligner" > + (string-append bin "/snap-aligner")) > + (copy-file "SNAPCommand" > + (string-append bin "/SNAPCommand")))))))) Instead of “copy-file” (which requires repeating the target file name) you can use this: (install-file "SNAPCommand" bin) > + (native-inputs > + `(("zlib" ,zlib))) > + (home-page "http://snap.cs.berkeley.edu/";) > + (synopsis "Short read DNA sequence aligner") > + (description > + "SNAP is a fast and accurate aligner for short DNA reads. It is > +optimized for modern read lengths of 100 bases or higher, and takes advantage > +of these reads to align data quickly through a hash-based indexing scheme.") > + (license license:asl2.0))) > + The rest looks good to me. Thanks! ~~ Ricardo
