Ludovic Courtès <[email protected]> writes: > Ricardo Wurmus <[email protected]> skribis: > >> From 6aa9c0cb97350d5cccb43a78e69e2b8887347df0 Mon Sep 17 00:00:00 2001 >> From: Ricardo Wurmus <[email protected]> >> Date: Fri, 2 Oct 2015 16:37:03 +0200 >> Subject: [PATCH] gnu: Add PePr. >> >> * gnu/packages/bioinformatics.scm (pepr): New variable. > > [...] > >> + (modify-phases %standard-phases >> + (add-after 'unpack 'disable-egg >> + (lambda _ >> + (substitute* "setup.py" >> + (("from setuptools import setup") >> + "from distutils.core import setup")) > > It would be nice if we had a bug ID or something to refer to this issue: > we don’t want to duplicate the explanation everywhere, yet it’d be nice > to have a pointer to the explanation. WDYT?
I added a comment with a link to an upstream bug report. >> + (description >> + "PePr is a ChIP-Seq peak calling or differential binding analysis tool >> +that is primarily designed for data with biological replicates. It uses a >> +negative binomial distribution to model the read counts among the samples in >> +the same group, and look for consistent differences between ChIP and control >> +group or two ChIP groups run under different conditions. PePr was published >> +on Bioinformatics on Jun 2014.") > > I’d remove the last sentence. Done. Pushed as d1e3282. Thanks! ~~ Ricardo
