From e6855970c278627a0ebbbe557c054bac653c513c Mon Sep 17 00:00:00 2001 From: Raoul Jean Pierre Bonnal Date: Tue, 27 Dec 2016 22:11:28 +0100 Subject: [PATCH 08/11] gnu: Add r-tximport. --- gnu/packages/bioinformatics.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d423f08..dbe1b92 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7618,6 +7618,27 @@ for DNA and protein sequences. This package supports several sequence kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.") (license license:gpl2+))) +(define-public r-tximport + (package + (name "r-tximport") + (version "1.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "tximport" version)) + (sha256 + (base32 + "1k5a7dad6zqg936s17f6cmwgqp11x24z9zhxndsgwbscgpyhpcb0")))) + (build-system r-build-system) + (home-page "http://bioconductor.org/packages/tximport") + (synopsis "Import and summarize transcript-level estimates for gene-level analysis") + (description + "Imports transcript-level abundance, estimated counts and transcript +lengths, and summarizes into matrices for use with downstream gene-level +analysis packages. Average transcript length, weighted by sample-specific +transcript abundance estimates, is provided as a matrix which can be used +as an offset for different expression of gene-level counts.") + (license license:gpl2))) + (define-public emboss (package (name "emboss") -- 1.9.1