From 14222e8cdbfc49093172d9f1a3bcc7999e72bcb5 Mon Sep 17 00:00:00 2001 From: Raoul Jean Pierre Bonnal Date: Tue, 27 Dec 2016 22:16:33 +0100 Subject: [PATCH 10/11] gnu: Add r-scater. --- gnu/packages/bioinformatics.scm | 38 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 154f509..678fae7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7685,6 +7685,44 @@ and for letting R applications work on datasets that are larger than the available RAM.") (license license:artistic2.0))) +(define-public r-scater + (package + (name "r-scater") + (version "1.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "scater" version)) + (sha256 + (base32 + "0pambafir3aqpgk7kdq5i2pn0278d97bn2qb9712c0jivw363whf")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biomart" ,r-biomart) + ("r-data-table" ,r-data-table) + ("r-dplyr" ,r-dplyr) + ("r-edger" ,r-edger) + ("r-ggbeeswarm" ,r-ggbeeswarm) + ("r-ggplot2" ,r-ggplot2) + ("r-limma" ,r-limma) + ("r-matrixstats" ,r-matrixstats) + ("r-plyr" ,r-plyr) + ("r-reshape2" ,r-reshape2) + ("r-rhdf5" ,r-rhdf5) + ("r-rjson" ,r-rjson) + ("r-shiny" ,r-shiny) + ("r-shinydashboard" ,r-shinydashboard) + ("r-tximport" ,r-tximport) + ("r-viridis" ,r-viridis))) + (home-page "https://github.com/davismcc/scater") + (synopsis "Single-cell analysis toolkit for gene expression data in R") + (description + "This package provides a collection of tools for doing various analyses +of single-cell RNA-seq gene expression data, with a focus on quality control.") + (license license:gpl2+))) + + (define-public emboss (package (name "emboss") -- 1.9.1