Hello,
I'm working on a project for penn state and I've been trying to automate some
basic tasks with this python script. However, everytime it runs I get:
** (python.exe:12912): WARNING **: Trying to register gtype 'GMountMountFlags'
as enum when in fact it is of type 'GFlags'
** (python.exe:12912): WARNING **: Trying to register gtype 'GDriveStartFlags'
as enum when in fact it is of type 'GFlags'
** (python.exe:12912): WARNING **: Trying to register gtype 'GSocketMsgFlags'
as enum when in fact it is of type 'GFlags'
(python.exe:12912): Module-CRITICAL **: level_func: assertion 'dfield && quark'
failed
(python.exe:12912): Module-CRITICAL **: linematch: assertion 'dfield && quark'
failed
(python.exe:12912): Module-CRITICAL **: grain_mark: assertion 'dfield &&
mquark' failed
(python.exe:12912): GwyModule-CRITICAL **: gwy_process_func_run: assertion
'func_info' failed
Based on other messages on the forum it seems like I need to use container
functions rather than the gwy functions, but I do not know how to find and use
these functions. Any help would be appreciated. Here is my code:
settings["/modules/grain_mark/isslope"] = False
settings["/modules/grain_mark/lap"] = 50
settings["/modules/grain_mark/merge_type"] = 0
settings["/modules/grain_mark/slope"] = 50
settings["/modules/grain_mark/update"] = True
#Defining sesttings for gaussian filter function
settings["/modules/filter/height"] = 348
settings["/modules/filter/width"] = 281
settings["/modules/filter/filter_type"] = 7
settings["/modules/filter/masking"] = 0
settings["/modules/filter/size"] = 5
#loads gwyddion file
container = gwy.gwy_file_load("test.spm", gwy.RUN_NONINTERACTIVE)
#adds the file to gwyddion browser for processing
gwy.gwy_app_data_browser_add(container)
#getting all the keys from each data field
"""
fields = gwyutils.get_data_fields_dir(container)
for key in fields.keys():
print(key)
"""
#running basic data processing functions on the gwyddion file
gwy.gwy_process_func_run('level', container, gwy.RUN_IMMEDIATE)
gwy.gwy_process_func_run('align_rows', container, gwy.RUN_IMMEDIATE)
gwy.gwy_process_func_run('grain_mark', container, gwy.RUN_IMMEDIATE)
#Doing a gaussian blur on image contents
gwy.gwy_process_func_run('GwyToolFilter', container, gwy.RUN_IMMEDIATE)
#saving the processed file
gwy.gwy_file_save(container, "processed.gwy", gwy.RUN_NONINTERACTIVE)
#removing the gwyddion file from memory
gwy.gwy_app_data_browser_remove(container)
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