Hi Matt & Guillaume, sorry for the confusion. Matt, you were right, I didn't have the most up to date version of gifti (I only checked the build stamp in the gifti.m). It works with v 1.2.
I have another question for Matt: what's the difference between thickness and corrThickness maps (I did not find anything in the documentation and all the corrections that are documented happen quite early, so there would not be 2 thickness versions) Thanks again, Franz Am 13.03.2013 um 16:23 schrieb Glasser, Matthew: > Hi Franz, > > Do you have the latest version of the GIFTI toolbox? This file opens fine > for me, but it is also possible that there is a bugfix that has not made > it into the released version of the GIFTI toolbox, which is maintained by > Guillaume Flandin. > > Thanks, > > Matt. > > On 3/13/13 9:42 AM, "Franz Liem" <[email protected]> wrote: > >> Dear HCP Team, >> >> First of all, thanks for releasing the data. They look amazing. >> >> I have a question concerning the gii files. I have tried to import them >> into matlab using http://www.artefact.tk/software/matlab/gifti/. This >> works fine for the coord files (e.g. xxx.L.inflated.164k_fs_LR.coord.gii) >> but fails for surface measures (e.g. >> 'xxx.L.curvature.164k_fs_LR.shape.gii' or thickness). >>> ??? Attempt to reference field of non-structure array. >>> Error in ==> read_gifti_file>gifti_LabelTable at 71 >>> s(1).index(i) = str2double(a.val); >>> Error in ==> read_gifti_file at 43 >>> this.label = gifti_LabelTable(t,uid(i)); >>> Error in ==> gifti.gifti at 68 >>> this = read_gifti_file(varargin{1},giftistruct); >> >> The gifti library seems to work with freesurfer output (of my own >> subjects) converted to gii (mirs_convert; i have done this using .white >> as well as .thickness). >> >> Is there something special with your gii files? >> Are there other matlab libraries capable of reading the HCP giis? >> >> >> Thanks so much for your help. >> Best, >> Franz >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ________________________________ > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
