Hi Donna, Thank you for the reply! Could you mind to give more details about these files: <input-coordinate-file-name> <input-topology-file-name> <input-metric-paint-or-shape-file-name> and <input-metric-paint-or-shape-column>? where are these in the 'fsaverage_LR32k' folder?
Best, Xiangyu On Tue, Dec 10, 2013 at 8:59 PM, Donna Dierker <[email protected]>wrote: > I'm not sure how to do this with workbench/wb_command, but it can be done > with caret5: > > http://brainvis.wustl.edu/wiki/index.php/Caret:Download > > You would find the midthickness 32k surf.gii that corresponds to the > label.gii and use commands like this: > > caret_command -surface-region-of-interest-selection > <input-coord-file-name> > <input-topology-file-name> > <input-region-of-interest-file-name.roi> > <output-region-of-interest-file-name.roi> > [-paint paint-file-name column paint-name NORMAL > > caret_command -surface-to-volume > <input-coordinate-file-name> > <input-topology-file-name> > <input-metric-paint-or-shape-file-name> > <input-metric-paint-or-shape-column> > <output-volume-file-name> > [-inner inner-boundary] > [-outer outer-boundary] > [-step intersection-step] > > Intersect a surface with a volume and assign the specified > column's data of the metric, paint, or shape file to the > volume. > > The output volume file must exist and it must be in the > same stereotaxic space as the surface. A volume file may > be created by using the "-volume-create" or > "-volume-create-in-stereotaxic-space" commands. > > The default inner boundary, outer boundar, and step size > are -1.5, 1.5, and 0.5 respectively. > > The metric, paint, or shape file column is either the > number of the column, which starts at one, or the name of > the column. If a name contains spaces, it must be > enclosed in double quotes. Name has priority over number. > > There might be an easier way, but this is what comes to mind. > > > On Dec 9, 2013, at 10:11 AM, Long <[email protected]> wrote: > > > Dear all, > > > > I'm trying to use the BAs from the well parcellated file > BA.32k_fs_LR.label.gii as the ROI, so how could I extract the specific BAs, > i.e., BA 4 from this file and convert it to the volumetric nifti image? > Thank you for your time! > > > > Best, > > Xiangyu > > _______________________________________________ > > HCP-Users mailing list > > [email protected] > > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
