Use it with FSL's applywarp and the appropriate input (standard) and reference (subject) volumes.

Peace,

Matt.

From: RenĂ© Labounek <[email protected]>
Date: Thursday, January 9, 2014 6:56 PM
To: "[email protected]" <[email protected]>
Subject: [HCP-Users] mask from MNI to subject space

Dear HCP users,

I have masks for tractography based on fMRI activation maps in MNI space. Is somewhere (e.g. in structural dataset) transform matrix which will transform the mask into subject space or I have to make FNIRT registration betwwen subject normal space scan and subject MNI space scan?

In xfms is file: standard2acpc_dc.nii.gz Can I use it or it works only for highres scans? I need it to in resolution 91x109x91 voxels.

Best,
Rene Labounek


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