Hiļ¼Greg and Donna, I found there are two different MNI 152 templates, the nonlinear one and the linear one, see http://www.bic.mni.mcgill.ca/ServicesAtlases/HomePage So I wonder which type of MNI 152 the HCP used? The above link is led from the FSL atlas webpage http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Atlases
Thanks. > On Mar 17, 2014, at 11:14 AM, Greg Burgess <[email protected]> wrote: > > In addition to those surface-based labels, which work for the CIFTI files > (dtseries.nii), the volume NIFTI files (.nii.gz) are in MNI152 space. > Therefore, any of the atlases provided with FSLView (or SPM for that matter) > should work to provide labels in volume-space. > > --Greg > > ____________________________________________________________________ > Greg Burgess, Ph.D. > Staff Scientist, Human Connectome Project > Washington University School of Medicine > Department of Anatomy and Neurobiology > Email: [email protected] > > > > >> On Mar 17, 2014, at 8:57 AM, Donna Dierker <[email protected]> wrote: >> >> Explore these label goodies in each subject's structural directory: >> >> ./MNINonLinear/110411.BA.164k_fs_LR.dlabel.nii >> ./MNINonLinear/110411.L.BA.164k_fs_LR.label.gii >> ./MNINonLinear/110411.L.aparc.164k_fs_LR.label.gii >> ./MNINonLinear/110411.L.aparc.a2009s.164k_fs_LR.label.gii >> ./MNINonLinear/110411.R.BA.164k_fs_LR.label.gii >> ./MNINonLinear/110411.R.aparc.164k_fs_LR.label.gii >> ./MNINonLinear/110411.R.aparc.a2009s.164k_fs_LR.label.gii >> ./MNINonLinear/110411.aparc.164k_fs_LR.dlabel.nii >> ./MNINonLinear/110411.aparc.a2009s.164k_fs_LR.dlabel.nii >> ./MNINonLinear/Native/110411.BA.native.dlabel.nii >> ./MNINonLinear/Native/110411.L.BA.native.label.gii >> ./MNINonLinear/Native/110411.L.aparc.a2009s.native.label.gii >> ./MNINonLinear/Native/110411.L.aparc.native.label.gii >> ./MNINonLinear/Native/110411.R.BA.native.label.gii >> ./MNINonLinear/Native/110411.R.aparc.a2009s.native.label.gii >> ./MNINonLinear/Native/110411.R.aparc.native.label.gii >> ./MNINonLinear/Native/110411.aparc.a2009s.native.dlabel.nii >> ./MNINonLinear/Native/110411.aparc.native.dlabel.nii >> ./MNINonLinear/fsaverage_LR32k/110411.BA.32k_fs_LR.dlabel.nii >> ./MNINonLinear/fsaverage_LR32k/110411.L.BA.32k_fs_LR.label.gii >> ./MNINonLinear/fsaverage_LR32k/110411.L.aparc.32k_fs_LR.label.gii >> ./MNINonLinear/fsaverage_LR32k/110411.L.aparc.a2009s.32k_fs_LR.label.gii >> ./MNINonLinear/fsaverage_LR32k/110411.R.BA.32k_fs_LR.label.gii >> ./MNINonLinear/fsaverage_LR32k/110411.R.aparc.32k_fs_LR.label.gii >> ./MNINonLinear/fsaverage_LR32k/110411.R.aparc.a2009s.32k_fs_LR.label.gii >> ./MNINonLinear/fsaverage_LR32k/110411.aparc.32k_fs_LR.dlabel.nii >> ./MNINonLinear/fsaverage_LR32k/110411.aparc.a2009s.32k_fs_LR.dlabel.nii >> ./T1w/110411/label >> ./T1w/110411/label/BA.ctab >> ./T1w/110411/label/BA.thresh.ctab >> ./T1w/110411/label/aparc.annot.DKTatlas40.ctab >> ./T1w/110411/label/aparc.annot.a2009s.ctab >> ./T1w/110411/label/aparc.annot.ctab >> ./T1w/110411/label/lh.BA.annot >> ./T1w/110411/label/lh.BA.thresh.annot >> ./T1w/110411/label/lh.BA1.label >> ./T1w/110411/label/lh.BA1.thresh.label >> ./T1w/110411/label/lh.BA2.label >> ./T1w/110411/label/lh.BA2.thresh.label >> ./T1w/110411/label/lh.BA3a.label >> ./T1w/110411/label/lh.BA3a.thresh.label >> ./T1w/110411/label/lh.BA3b.label >> ./T1w/110411/label/lh.BA3b.thresh.label >> ./T1w/110411/label/lh.BA44.label >> ./T1w/110411/label/lh.BA44.thresh.label >> ./T1w/110411/label/lh.BA45.label >> ./T1w/110411/label/lh.BA45.thresh.label >> ./T1w/110411/label/lh.BA4a.label >> ./T1w/110411/label/lh.BA4a.thresh.label >> ./T1w/110411/label/lh.BA4p.label >> ./T1w/110411/label/lh.BA4p.thresh.label >> ./T1w/110411/label/lh.BA6.label >> ./T1w/110411/label/lh.BA6.thresh.label >> ./T1w/110411/label/lh.MT.label >> ./T1w/110411/label/lh.MT.thresh.label >> ./T1w/110411/label/lh.V1.label >> ./T1w/110411/label/lh.V1.thresh.label >> ./T1w/110411/label/lh.V2.label >> ./T1w/110411/label/lh.V2.thresh.label >> ./T1w/110411/label/lh.aparc.DKTatlas40.annot >> ./T1w/110411/label/lh.aparc.a2009s.annot >> ./T1w/110411/label/lh.aparc.annot >> ./T1w/110411/label/lh.cortex.deformed.label >> ./T1w/110411/label/lh.cortex.label >> ./T1w/110411/label/lh.cortex.prehires.label >> ./T1w/110411/label/lh.entorhinal_exvivo.label >> ./T1w/110411/label/lh.perirhinal.label >> ./T1w/110411/label/rh.BA.annot >> ./T1w/110411/label/rh.BA.thresh.annot >> ./T1w/110411/label/rh.BA1.label >> ./T1w/110411/label/rh.BA1.thresh.label >> ./T1w/110411/label/rh.BA2.label >> ./T1w/110411/label/rh.BA2.thresh.label >> ./T1w/110411/label/rh.BA3a.label >> ./T1w/110411/label/rh.BA3a.thresh.label >> ./T1w/110411/label/rh.BA3b.label >> ./T1w/110411/label/rh.BA3b.thresh.label >> ./T1w/110411/label/rh.BA44.label >> ./T1w/110411/label/rh.BA44.thresh.label >> ./T1w/110411/label/rh.BA45.label >> ./T1w/110411/label/rh.BA45.thresh.label >> ./T1w/110411/label/rh.BA4a.label >> ./T1w/110411/label/rh.BA4a.thresh.label >> ./T1w/110411/label/rh.BA4p.label >> ./T1w/110411/label/rh.BA4p.thresh.label >> ./T1w/110411/label/rh.BA6.label >> ./T1w/110411/label/rh.BA6.thresh.label >> ./T1w/110411/label/rh.MT.label >> ./T1w/110411/label/rh.MT.thresh.label >> ./T1w/110411/label/rh.V1.label >> ./T1w/110411/label/rh.V1.thresh.label >> ./T1w/110411/label/rh.V2.label >> ./T1w/110411/label/rh.V2.thresh.label >> ./T1w/110411/label/rh.aparc.DKTatlas40.annot >> ./T1w/110411/label/rh.aparc.a2009s.annot >> ./T1w/110411/label/rh.aparc.annot >> ./T1w/110411/label/rh.cortex.deformed.label >> ./T1w/110411/label/rh.cortex.label >> ./T1w/110411/label/rh.cortex.prehires.label >> ./T1w/110411/label/rh.entorhinal_exvivo.label >> ./T1w/110411/label/rh.perirhinal.label >> ./T1w/110411/mri/aseg.auto_noCCseg.label_intensities.txt >> ./T1w/110411/mri/talairach.label_intensities.txt >> >> Also check out these links: >> http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Atlases >> http://brainvis.wustl.edu/wiki/index.php/Caret:Atlases:Conte69_Atlas >> >> Donna >> >> >>> On Mar 14, 2014, at 7:18 PM, Hai Shu <[email protected]> wrote: >>> >>> Dear Sir or Madam, >>> Do you have any corresponding structural anatomical atlas for the ICA-FIX >>> denoised rfMRI data? From the atlas, I hope to know which voxels belong to >>> a certain Brodmann area or subcortical region like hippocampus. >>> Thanks. >>> _______________________________________________ >>> HCP-Users mailing list >>> [email protected] >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
