Thanks Jenn, However I have another problem.
Though I tried to open the file "MNINonLinear/Native/100307.L.aparc.native.label.gii" and "MNINonLinear/100307.aparc.164k_fs_LR.dlabel.nii" you've mentioned, I have problem in seeing the data. I of course installed MRIcron from ( http://www.mccauslandcenter.sc.edu/mricro/mricron/install.html), but the latter have a problem with warnig"the header file is not in NIfTi format...". What should I install to see both of the data? And ,if there is, please tell me the code to see them in "Matlab." Thanks a lot! Ikko 2014-05-03 5:57 GMT+09:00 Jennifer Elam <[email protected]>: > Hi Ikko, > > > > The Freesurfer-derived volumes and average thickness of the Desikan ROI > parcels (e.g. right cuneus) for the individual subjects are also included > in the behavioral data that you downloaded as a CSV (from Quick Downloads). > > > > You can also browse these measures by subject in the ConnectomeDB > dashboard accessible by clicking the Explore [BETA] button for All > Subjects. Once you are on the Dashboard, click Add Tab on the right and > select FreeSurfer. Scroll to the right to browse summary volumes, or > volume, avg thickness, or surface area for each ROI. > > > > If you want more detailed info than what comes out of FreeSurfer, you can > get it by working with the individual subjects imaging data, but someone > else will have to give you advice on how best to do that. > > Best, > > Jenn > > > > Jennifer Elam, Ph.D. > Outreach Coordinator, Human Connectome Project > Washington University School of Medicine > Department of Anatomy and Neurobiology, Box 8108 > 660 South Euclid Avenue > St. Louis, MO 63110 > 314-362-9387 > [email protected] > www.humanconnectome.org > > > > *From:* 木村一皓 [mailto:[email protected]] > *Sent:* Thursday, May 01, 2014 9:59 PM > *To:* Jennifer Elam > *Cc:* [email protected] > *Subject:* Re: [HCP-Users] Questions about the behavioral data > > > > Thanks Jenn, > > > > I'm always really thankful for your courteous reply. > > And, sorry, one more qustion about question 2. > > > > I am thinking about getting the data of volume or thickness of brain in > more detail on each subject. > > (e.g. volume of gray matter or white matter on rigtht cuneus) > > Can I do this through http://surfer.nmr.mgh.harvard. > edu/fswiki/CorticalParcellation with data of ConnectomeDB? > > > > Thanks again, > > Ikko > > > > > > > > 2014-05-02 2:33 GMT+09:00 Jennifer Elam <[email protected]>: > > Hi Ikko, > > > > 1. If you downloaded the behavioral data CSV, the Penn Progressive > Matrices scores for each subject are listed under the abbreviations > PMAT24_A_CR, PMAT24_A_SI, PMAT24_A_RTCR. If you open the file in > Excel or another spreadsheet program these should be columns AR-AT. The key > to all of the abbreviations used for the HCP behavioral and individual > difference measures is in the Q3 Reference Manual Appendix > VII<http://humanconnectome.org/documentation/Q3/HCP_Q3_Release_Appendix_VII.pdf>, > available on the HCP website (www.humanconnectome.org) though the > Documentation tab. > > > > 2. The HCP behavioral data includes the surface area of each region > in the FreeSurfer Desikan atlas cortical parcellation (more info at > http://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation and in > https://surfer.nmr.mgh.harvard.edu/ftp/articles/desikan06-parcellation.pdf) > created for each subject in the HCP preprocessing pipelines. > > If you download the structural preprocessed package for a particular > subject, Desikan atlas surface and volume ROI parcel labels generated in > Freesurfer are included for the volume and different surface meshes in the > directory tree in NIFTI volume (e.g. T1w/aparc+aseg.nii.gz), GIFTI > surface (e.g. MNINonLinear/Native/100307.L.aparc.native.label.gii) and > CIFTI (e.g. MNINonLinear/100307.aparc.164k_fs_LR.dlabel.nii), which > includes surface labels from both hemispheres). See the Q3 Release Ref > Manual Appendix > III<http://humanconnectome.org/documentation/Q3/HCP_Q3_Release_Appendix_III.pdf>, > Section B: Preprocessed Data Directory Structure, Structural Volume and > Surface Data for a list of the files provided in the structural > preprocessed package. > > > > 3. The HCP recruits twins and their non twin siblings to be > subjects in the study. The “unrelated” refers to the fact that all subjects > in the group (e.g. of 80) are not part of the same family, i.e. they are > not genetically related to one another. We provide groups of unrelated > subjects to allow researchers to do initial explorations with the open > access data without being concerned about heritability issues. > Investigators must apply for restricted > access<http://humanconnectome.org/data/restricted-access/index.html>to view > the family structure of subjects in the database. > > > > Best, > > Jenn > > Jennifer Elam, Ph.D. > > Outreach Coordinator, Human Connectome Project > > Washington University School of Medicine > > Department of Anatomy and Neurobiology, Box 8108 > > 660 South Euclid Avenue > > St. Louis, MO 63110 > > 314-362-9387 > > [email protected] > > www.humanconnectome.org > > *From:* [email protected] [mailto: > [email protected]] *On Behalf Of *???? > *Sent:* Wednesday, April 30, 2014 8:51 AM > *To:* [email protected] > *Subject:* [HCP-Users] Questions about the behavioral data > > > > Hi, > > > > I am now seeing the data of "behavioral data" from "Quick Downloads," > having several problems. > > > > My questions are: > > > > 1. I know that HCP have datas of "Fluid Intelligence(Pennn Progressive > Matrices)" on each subjects with number of correct responses, total skipped > items, and median reaction time, but I can't see them from "behvioral data." > > Where can I find them for each subject? > > > > 2.Downloading the "behavioral data", now I can have the data of "suraface > area." > > Can I have the information of which part they decided as a particular > region(say right cuneus) in nii files(or else) for all 66 regions? > > > > 3.From "HCP MR Data Q3 Releases," I can see unrelated subjects(like "80 > Unrelated Subjects") > > Does "unrealted" mean that they are the data of not-so-special people (or > the data with having Gaussian manner) in U.S.? > > > > Sorry for taking your time, > > Ikko Kimura > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
