Hello all, I recently downloaded the preprocessed and analyzed volume data from the 100 Unrelated Subjects group. My understanding is that to conduct group analyses, I now need to run the prepare_level2_feat_analysis.sh script for each of the tasks for each of the subjects. However, when I try to run that script from the various level 2 task directories for various subjects, I always get the same error message, e.g.:
Cannot find /Volumes/Connectomizer/HCP/Subjects/111312/MNINonLinear/Results/tfMRI_GAMBLING/../tfMRI_GAMBLING_RL/tfMRI_GAMBLING_RL_hp200_s4.feat Cannot find /Volumes/Connectomizer/HCP/Subjects/111312/MNINonLinear/Results/tfMRI_GAMBLING/../tfMRI_GAMBLING_LR/tfMRI_GAMBLING_LR_hp200_s4.feat Cannot find any lower-level .feat directories!!! When I look in those lower-level task directories, I only see the level1.fsf files, so it seems like the level 1 .feat directories are missing. These level 1 .feat directories are not mentioned in the directory structure information from the 500 Subjects Release Reference Manual, though. Are these level 1 .feat directories necessary, and if so, is there a way to download them? Or will I need to generate them using FSL? Many thanks for your help! -Ely B. Ely PhD Student Icahn School of Medicine at Mount Sinai _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
