Dear HCP experts, We've been having difficulties with running BEDPOSTX on the cluster and we do not know what the problem is, so if anybody would have any suggestions, we would be very grateful. The problem is the following.
When running the following command on the clusters with FSL 5.6 bedpostx ./DTI/s1 -n 3 -b 1000 -model 2 -w 1 -g It arrives to process a certain number of slices (17 last time), then it just stops. The thing is that it does not stop with an error message, or with something that IT people can identify. It just stops. We don't know if it is a problem with a certain FSL-version (we tried older versions, but they also didn't work) of with the cluster.... We also tried running bedpostx on a normal computer with the latest FSL version. We ran the following command: bedpostx dti_folder_path -n 3 --model=2 and it worked. We guess the command is the one as above, since -b 1000 and -w 1 are default values. On the other hand -g was not recognized as the correct option on the desktop, and when we added it to the command, it did not work. But in this case it was not the same problem we had on cluster (stopping after a number of slices), it just stopped. To us, this looks like a mixed problem between a FSL one (version, commands, etc), and one connected to the architecture (cluster vs pc).... Does anybody have any thoughts on how we could solve this? Thanks! Best, Nele De Witte Psychophathology and Affective Neuroscience lab (PANlab) Ghent University _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
