I¹d recommend option ii.
You can use the surfaces and label data in the
${StudyFolder}/${SubjectID}/MNINonLinear/fsaverage_LR32k folder together
with the dense timeseries data. To load the data into matlab, you can use
these attached matlab functions together with wb_command and the matlab
GIFTI toolbox:cii = ciftiopen(Œpath/to/file¹,¹path/to/wb_command¹); CIFTIdata = cii.cdata; Some lines of analysis code newcii = cii; newcii.cdata = AnalysisOutput; ciftisave(newcii,¹path/to/newfile¹,¹path/to/wb_command¹); Or if the data matrix is a different size from what you started with ciftisavereset(newcii,¹path/to/newfile¹,¹path/to/wb_command¹); And then you can view your result in Connectome Workbench¹s wb_view on the 32k standard surfaces. Peace, Matt. On 9/9/14, 10:22 AM, "K. Wagstyl" <[email protected]> wrote: >Hi, > >I'm trying to carry out some analysis on the preprocessed resting-state >fMRI but running into some problems with the *.dtseries.nii files. >The first part of the analysis was carried out on structural data in >freesurfer and matlab (using labels etc) >Is there any way of converting the resting-state data into a format for >similar analysis? > >In other words, either >i) mapping the time series to individuals' freesurfer-space vertices >or >ii) importing the grayordinate data into matlab? > >Thanks, >Konrad >_______________________________________________ >HCP-Users mailing list >[email protected] >http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
ciftiopen.m
Description: ciftiopen.m
ciftisave.m
Description: ciftisave.m
ciftisavereset.m
Description: ciftisavereset.m
