Thanks for the information. The issues and fixes page suggests that the reconstruction artifact for subject 727654 only pertains to the emotion task data (https://wiki.humanconnectome.org/display/PublicData/HCP+Data+Release+Updates%3A+Known+Issues+and+Planned+fixes). Is this correct, or would you recommend excluding this subject from all analyses (e.g. resting-state)?
Thanks again! **************** Estrid Jakobsen PhD Student, IMPRS NeuroCom Department of Neurophysics Max Planck Research Group Neuroanatomy and Connectivity Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig +49 341 9940-2423 ----- Original Message ----- From: "Michael Harms" <[email protected]> To: "Estrid Jakobsen" <[email protected]>, [email protected] Sent: Thursday, September 11, 2014 4:06:51 PM Subject: Re: [HCP-Users] Subject directories missing from connectome in a box Hi, The omission of those 4 subjects from the 500 subject release was intentional. For the first 3 of those subjects, they didn't have gradient-echo fieldmaps to accompany the structurals. The GE fieldmaps are not mandatory for running the structurals through the HCP pipelines, but we didn't get the process for handling those exceptions automated in time for the 500 subject release. For 727654, we need to "retro-recon" that subject's functional runs. The data from that subject ideally would not have been released in earlier releases. We anticipate that all 4 of those subjects will "return" when the next batch of subjects gets released sometime in Spring 2015. cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: [email protected] On 9/11/14 6:39 AM, "Estrid Jakobsen" <[email protected]> wrote: >Dear all, > >We recently received the updated "connectome in a box" with the new 500 >subject release. I've noticed that four subjects, which were previously >included in data downloaded from connectomeDB, are missing from the new >data. I was wondering if these subjects have been removed on purpose >(although I can't find any information on the website suggesting this), >or if they are likely to be missing due to an error while transferring >the data to and from the hard drive. > >The missing subjects are: >111009 >111514 >429040 >727654 > >Any further information would be much appreciated. >Best, > >Estrid > >**************** >Estrid Jakobsen >PhD Student, IMPRS NeuroCom >Department of Neurophysics >Max Planck Research Group Neuroanatomy and Connectivity >Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig >+49 341 9940-2423 >_______________________________________________ >HCP-Users mailing list >[email protected] >http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
