Hi Bryan, We have updated the Connectome Workbench v1.0 Tutorial to clarify setting the variable path in the set up instructions. Thanks for the feedback!
Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy and Neurobiology, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 el...@pcg.wustl.edu www.humanconnectome.org From: hcp-users-boun...@humanconnectome.org [mailto:hcp-users-boun...@humanconnectome.org] On Behalf Of Chiu, Bryan (PHTH) Sent: Thursday, September 18, 2014 12:41 PM To: Glasser, Matthew; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] HCP Workbench installation Hi, thanks Matthew and Michael. The PATH needs to point to the subdirectory bin_rh_linux64 . The tutorial states that bashrc needs to point the path to the higher level directory 'workbench'. The issue has been resolved and the .bashrc file looks like # .bashrc # Source global definitions if [ -f /etc/bashrc ]; then . /etc/bashrc fi # User specific aliases and functions export PATH=/usr/local/cuda-5.5/bin:$PATH export LD_LIBRARY_PATH=/usr/local/cuda-5.5/lib64:$LD_LIBRARY_PATH export PATH=$PATH:/home/TLA/Desktop/workbench/bin_rh_linux64 Thanks for your help. _______________________________________ Bryan Chiu Undergraduate Research Assistant Aging, Mobility, and Cognitive Neuroscience Lab Djavad Mowafaghian Centre for Brain Health Department of Physical Therapy Faculty of Medicine University of British Columbia _____ From: Glasser, Matthew [glass...@wusm.wustl.edu] Sent: Thursday, September 18, 2014 10:38 AM To: Chiu, Bryan (PHTH); hcp-users@humanconnectome.org Subject: Re: [HCP-Users] HCP Workbench installation $path and $PATH are not the same variable and your shell only cares about what is in $PATH when searching for a binary. Peace, Matt. From: <Chiu>, "Bryan (PHTH)" <bryan.c...@ubc.ca> Date: Thursday, September 18, 2014 at 12:30 PM To: Matt Glasser <glass...@wusm.wustl.edu>, "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: RE: [HCP-Users] HCP Workbench installation That would be both instances of 'path' ? " # .bashrc # Source global definitions if [ -f /etc/bashrc ]; then . /etc/bashrc fi # User specific aliases and functions export PATH=/usr/local/cuda-5.5/bin:$PATH export LD_LIBRARY_PATH=/usr/local/cuda-5.5/lib64:$LD_LIBRARY_PATH export PATH=$PATH:/home/TLA/Desktop/workbench/ " _______________________________________ Bryan Chiu Undergraduate Research Assistant Aging, Mobility, and Cognitive Neuroscience Lab Djavad Mowafaghian Centre for Brain Health Department of Physical Therapy Faculty of Medicine University of British Columbia _____ From: Glasser, Matthew [glass...@wusm.wustl.edu] Sent: Thursday, September 18, 2014 10:25 AM To: Chiu, Bryan (PHTH); hcp-users@humanconnectome.org Subject: Re: [HCP-Users] HCP Workbench installation It needs to be all capitals. Peace, Matt. From: <Chiu>, "Bryan (PHTH)" <bryan.c...@ubc.ca> Date: Thursday, September 18, 2014 at 12:23 PM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] HCP Workbench installation Hello, Fairly new to HCP and the Workbench. I am also novice at Linux. In the HCP Tutorial pdf, it states that we need to set a variable $path in our .bashrc file. I have added the line, but when I try "wb_view" in Terminal, it states that the command is not found. This leads me to believe that I haven't set the $path variable correctly. Here is my .bashrc file # .bashrc # Source global definitions if [ -f /etc/bashrc ]; then . /etc/bashrc fi # User specific aliases and functions export PATH=/usr/local/cuda-5.5/bin:$PATH export LD_LIBRARY_PATH=/usr/local/cuda-5.5/lib64:$LD_LIBRARY_PATH export path=$path:/home/TLA/Desktop/workbench/ Where in this case I have extracted the 'workbench' folder to my desktop. Any help with setting the correct variable in the .bashrc file would be appreciated. Thanks, _______________________________________ Bryan Chiu Undergraduate Research Assistant Aging, Mobility, and Cognitive Neuroscience Lab Djavad Mowafaghian Centre for Brain Health Department of Physical Therapy Faculty of Medicine University of British Columbia _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users _____ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _____ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
