This is related to my question yesterday about what files can be deleted after 
an analysis is complete... is there a description available of what the 
resulting files are? I see in the reference manual a very short description of 
the contents of the directories, and the appendix III has some more detailed 
listings of the files but not descriptions of what the files actually are.

Specifically, in the T1w directory, what are these files?
ribbon.nii.gz
T1w1_gdc.nii.gz
T1w_acpc_brain_mask.nii.gz
T1w_acpc_brain.nii.gz
T1w_acpc_dc_brain.nii.gz
T1w_acpc_dc.nii.gz
T1w_acpc_dc_restore_1mm.nii.gz
T1w_acpc_dc_restore_brain_1mm.nii.gz
T1w_acpc_dc_restore_brain.nii.gz
T1w_acpc_dc_restore.nii.gz
T1w_acpc.nii.gz
T1wDividedByT2w.nii.gz
T1wDividedByT2w_ribbon.nii.gz
T1w.nii.gz
T2w_acpc_dc.nii.gz
T2w_acpc_dc_restore_brain.nii.gz
T2w_acpc_dc_restore.nii.gz
And in the MNINonLinear/Results/task directory, what are those files?
resting_Atlas.dtseries.nii
resting_AtlasSubcortical_s2.nii.gz
resting_Jacobian.nii.gz
resting.L.atlasroi.32k_fs_LR.func.gii
resting.L.native.func.gii
resting.nii.gz
resting.R.atlasroi.32k_fs_LR.func.gii
resting.R.native.func.gii
resting_s2.atlasroi.L.32k_fs_LR.func.gii
resting_s2.atlasroi.R.32k_fs_LR.func.gii
resting_SBRef.nii.gz

Over time, I hope to understand what all the files are, but for now I'm 
interested to know:

-          What is the processed 4D timeseries file that can be used later on 
to calculate stats

-          What is 3D processed T1 image on which all the parcellations and 
mappings were based.

Thanks!
-Greg

_________________________________________________
Gregory Book
Senior Technology Manager
Olin Neuropsychiatry Research Center, Institute of Living, Hartford Hospital
200 Retreat Avenue
Hartford, CT 06106
Tel: 860-545-7267 Fax: 860-545-7797
[email protected]<mailto:[email protected]>
http://nidb.sourceforge.net


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