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Please use the launcher scripts in ${GitRepo}/Examples and don’t modify the pipelines themselves unless you know what you are doing (i.e. have read and understood the code). Only the code in examples is intended for you to modify.
Peace,
Matt.
From: Jennifer Elam <[email protected]>
Date: Tuesday, October 14, 2014 at 5:08 PM To: "[email protected]" <[email protected]> Cc: "[email protected]" <[email protected]> Subject: [HCP-Users] FW: HCP Scripts From:[email protected]
[mailto:[email protected]]
Hello, thank you all for publishing this extensive set of image processing scripts. I've gotten the PreFreesufer and FreeSurfer scripts working, however in the PostFreesurferPipeline.sh there are references to a T1w_acpc_dc_restore, T2w_acpc_dc_restore as well as T1w_restore/T2w_restore and OriginalT1wImage, OriginalT2wImage.
Could anyone explain how these differences would affect the way the script runs? My thought would be that the I should just use the same original T1w and T2w images, but I just want to be sure. Thanks for the help, -Micah -- Micah Chambers, M.S. Ahmanson-Lovelace Brain Mapping Center University of California Los Angeles 635 Charles E. Young Drive SW, Suite 225 Los Angeles, CA 90095-7334 310-206-2101 (Office) 703-307-7692 (Cell) email: [email protected] Jennifer Elam, Ph.D. _______________________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ |
- [HCP-Users] FW: HCP Scripts Jennifer Elam
- Re: [HCP-Users] FW: HCP Scripts Glasser, Matthew
