ok thanks...I was wondering how you guys handle errors like these? Or are your data so awesome that it never happens? ;-)
__________________________ gaurav patel [email protected] www.neurofreak.net On Oct 24, 2014, at 2:46 PM, Harms, Michael wrote: > > Hi Gaurav, > As the pipelines currently stand, they haven't yet been extended to > incorporate manual FS edits. It shouldn't be overly difficult for someone > familiar with FS editing and the various stages in FS to modify the pipelines > appropriately. > > cheers, > -MH > > -- > Michael Harms, Ph.D. > ----------------------------------------------------------- > Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: [email protected] > > From: Gaurav Patel <[email protected]> > Date: Friday, October 24, 2014 1:37 PM > To: HCP Users <[email protected]> > Subject: [HCP-Users] freesurfer errors > > Hi! I've run a number of subjects acquired on our GE scanner through the > pipeline without issue until now. With this particular subject I am seeing > freesurfer segmentation errors where the pial surface estimate includes dura > (see attached picture--scan was 2x.8mm isotropic FSPGR). These errors are > present with freesurfer versions 5.2 and 5.3-HCP (I haven't tried plain 5.3 > yet but my guess is that it would be the same). I know how to correct these > when using freesurfer by itself, but I was wondering how you handle this > within the pipeline--it seems that I would have to manually skip the initial > parts of the FreeSurfer pipeline to incorporate my manual edits which seems > messy. Any advice? Thanks! > > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > <Screen shot 2014-10-24 at 2.29.37 PM.png> > > > __________________________ > gaurav patel > [email protected] > www.neurofreak.net > > > > > > > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > > <Screen shot 2014-10-24 at 2.29.37 PM.png> _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
