Is data created by the HCP pipeline. I made a t-map and saved it as a cifti file with 91K brain ordinates and I would like to cluster extent thresholding using the -cifti-fiind-clusters command but I am not sure what to use as the surface inputs files.
Thanks, _______________ Marta Moreno-Ortega, Ph.D. Postdoctoral Research Fellow Division of Experimental Therapeutics New York State Psychiatric Institute Department of Psychiatry Columbia University College of Physicians and Surgeons On Jan 12, 2015, at 11:09 PM, "Glasser, Matthew" <[email protected]> wrote: > Is this HCP data or your own data? > > Matt. > > From: Marta Moreno <[email protected]> > Date: Monday, January 12, 2015 at 10:06 PM > To: Matt Glasser <[email protected]> > Cc: "[email protected]" <[email protected]> > Subject: Re: [HCP-Users] -cifti-separate > > What is the required surface input for -cifti-find-clusters? > > Thanks, > _______________ > Marta Moreno-Ortega, Ph.D. > Postdoctoral Research Fellow > Division of Experimental Therapeutics > New York State Psychiatric Institute > Department of Psychiatry > Columbia University College of Physicians and Surgeons > > > > > On Jan 12, 2015, at 11:01 PM, "Glasser, Matthew" <[email protected]> > wrote: > >> I didn’t read your question closely enough. You cannot make a surface from >> -cifti-separate (you can make data that you can display and analyze on a >> surface however). >> >> Peace, >> >> Matt. >> >> From: Marta Moreno <[email protected]> >> Date: Monday, January 12, 2015 at 9:59 PM >> To: Matt Glasser <[email protected]> >> Cc: "[email protected]" <[email protected]> >> Subject: Re: [HCP-Users] -cifti-separate >> >> wb_command <cifti-in> COLUMN -metric CORTEX_RIGHT <metric-out> >> >> Thanks, >> _______________ >> Marta Moreno-Ortega, Ph.D. >> Postdoctoral Research Fellow >> Division of Experimental Therapeutics >> New York State Psychiatric Institute >> Department of Psychiatry >> Columbia University College of Physicians and Surgeons >> >> >> >> >> On Jan 12, 2015, at 10:54 PM, "Glasser, Matthew" <[email protected]> >> wrote: >> >>> Please post your wb_command -cifti-separate command line. >>> >>> Peace, >>> >>> Matt. >>> >>> From: Marta Moreno <[email protected]> >>> Date: Monday, January 12, 2015 at 9:52 PM >>> To: "[email protected]" <[email protected]> >>> Subject: [HCP-Users] -cifti-separate >>> >>> Hi users, >>> >>> I am using the -cifti-separate command to generate a surface (i.e. CORTEX >>> RIGHT) to use as right surface input to the -cifti-find-clusters command. >>> The output from cifti-separate is not recognized. How do I convert it to a >>> format that will work with cifti-find-clusters? I tried -metric-convert but >>> to no avail. >>> >>> Thank you, >>> >>> _______________ >>> Marta Moreno-Ortega, Ph.D. >>> Postdoctoral Research Fellow >>> Division of Experimental Therapeutics >>> New York State Psychiatric Institute >>> Department of Psychiatry >>> Columbia University College of Physicians and Surgeons >>> >>> >>> >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> [email protected] >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>> >>> >>> The materials in this message are private and may contain Protected >>> Healthcare Information or other information of a sensitive nature. If you >>> are not the intended recipient, be advised that any unauthorized use, >>> disclosure, copying or the taking of any action in reliance on the contents >>> of this information is strictly prohibited. If you have received this email >>> in error, please immediately notify the sender via telephone or return mail. >> >> >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. > > > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
