Hi all,
I have run the tutorial data through the HCP pipelines (v.3.4.0), but I wish to
further process the resting state data. I am not sure how to proceed, however.
The preprocessed data are in two places
(Pipelines_ExampleData/100307/rfMRI_REST1_RL{LR}, and
Pipelines_ExampleData/100307/MNINonLinear/Results/rfMRI_REST1_RL{LR}), albeit
the files are different in the two places.
I presume I want to use the latter to compute functional connectivity and
related measures. I further assume the data there are motion-corrected and
spatially normalized, but that no covariates have been removed and the data are
not smoothed or filtered yet. I'm also not sure which files to use or how to
merge the two resting state encodings.
Is there a script that handles these next steps so that I can compute
functional connectivities, etc.? I didn't find anything in the pipeline manual
about this.
Thanks,
Matt
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